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Cluster: CGMR041908_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_201956 k141_201956_2 762 2624 + CE20 | CE20
CAZyme k141_201956 k141_201956_3 2651 5599 + GH115
TC k141_201956 k141_201956_4 5632 7410 + 9.B.33.1.1
TF k141_201956 k141_201956_5 7424 9013 + HTH_AraC
TC k141_201956 k141_201956_6 9168 10865 + 3.A.1.1.29
TC k141_201956 k141_201956_7 10950 11906 + 3.A.1.1.29
TC k141_201956 k141_201956_8 11939 12844 + 3.A.1.1.29
CAZyme k141_201956 k141_201956_9 12860 14008 + GH8
CAZyme k141_201956 k141_201956_10 14028 15566 + CBM91 | GH43_12
NULL(UNKNOWN) k141_201956 k141_201956_11 15645 17297 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_201956 k141_201956_12 17331 19475 + GH3
Gene ID: k141_201956_2
Type: CAZyme
Location: 762 - 2624 (+)
Gene ID: k141_201956_3
Type: CAZyme
Location: 2651 - 5599 (+)
Gene ID: k141_201956_4
Type: TC
Location: 5632 - 7410 (+)
Gene ID: k141_201956_5
Type: TF
Location: 7424 - 9013 (+)
Gene ID: k141_201956_6
Type: TC
Location: 9168 - 10865 (+)
Gene ID: k141_201956_7
Type: TC
Location: 10950 - 11906 (+)
Gene ID: k141_201956_8
Type: TC
Location: 11939 - 12844 (+)
Gene ID: k141_201956_9
Type: CAZyme
Location: 12860 - 14008 (+)
Gene ID: k141_201956_10
Type: CAZyme
Location: 14028 - 15566 (+)
Gene ID: k141_201956_11
Type:
Location: 15645 - 17297 (+)
Gene ID: k141_201956_12
Type: CAZyme
Location: 17331 - 19475 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Roseburia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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