Cluster: CGMR041908_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR041908
- CGC Family ID: CGCFAM_08590
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_128898 | k141_128898_135 | 155647 | 156663 | + | 3.A.1.13.2 |
| TC | k141_128898 | k141_128898_136 | 156797 | 157936 | + | 3.A.1.13.2 |
| CAZyme | k141_128898 | k141_128898_137 | 158050 | 159141 | + | GT111 |
| pfam | k141_128898 | k141_128898_138 | 159186 | 159599 | + | 4HBT | 4HBT_3 |
| NULL(UNKNOWN) | k141_128898 | k141_128898_139 | 159625 | 159777 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_128898 | k141_128898_140 | 160072 | 161109 | - | CE8 |
| CAZyme | k141_128898 | k141_128898_141 | 161338 | 164268 | + | GH13_11 |
Gene ID: k141_128898_135
Type: TC
Location: 155647 - 156663 (+)
Type: TC
Location: 155647 - 156663 (+)
Gene ID: k141_128898_136
Type: TC
Location: 156797 - 157936 (+)
Type: TC
Location: 156797 - 157936 (+)
Gene ID: k141_128898_137
Type: CAZyme
Location: 158050 - 159141 (+)
Type: CAZyme
Location: 158050 - 159141 (+)
Gene ID: k141_128898_138
Type: pfam
Location: 159186 - 159599 (+)
Type: pfam
Location: 159186 - 159599 (+)
Gene ID: k141_128898_139
Type:
Location: 159625 - 159777 (-)
Type:
Location: 159625 - 159777 (-)
Gene ID: k141_128898_140
Type: CAZyme
Location: 160072 - 161109 (-)
Type: CAZyme
Location: 160072 - 161109 (-)
Gene ID: k141_128898_141
Type: CAZyme
Location: 161338 - 164268 (+)
Type: CAZyme
Location: 161338 - 164268 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.