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Cluster: CGMR041908_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_22413 k141_22413_3 1761 3542 + 3.A.1.106.3
TC k141_22413 k141_22413_4 3606 5396 + 3.A.1.106.3
pfam k141_22413 k141_22413_5 5574 6500 - Lactamase_B
pfam k141_22413 k141_22413_6 6693 7877 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme k141_22413 k141_22413_7 7912 10356 + GT2 | GT2
NULL(UNKNOWN) k141_22413 k141_22413_8 10438 10644 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_22413 k141_22413_9 10641 12611 + GT2 | GT2
CAZyme k141_22413 k141_22413_10 12691 13647 + GT2
TC k141_22413 k141_22413_11 13796 15214 + 9.B.18.1.1
pfam k141_22413 k141_22413_12 15226 16347 + LytR_cpsA_psr
CAZyme k141_22413 k141_22413_13 16348 17301 + GT2
Gene ID: k141_22413_3
Type: TC
Location: 1761 - 3542 (+)
Gene ID: k141_22413_4
Type: TC
Location: 3606 - 5396 (+)
Gene ID: k141_22413_5
Type: pfam
Location: 5574 - 6500 (-)
Gene ID: k141_22413_6
Type: pfam
Location: 6693 - 7877 (+)
Gene ID: k141_22413_7
Type: CAZyme
Location: 7912 - 10356 (+)
Gene ID: k141_22413_8
Type:
Location: 10438 - 10644 (+)
Gene ID: k141_22413_9
Type: CAZyme
Location: 10641 - 12611 (+)
Gene ID: k141_22413_10
Type: CAZyme
Location: 12691 - 13647 (+)
Gene ID: k141_22413_11
Type: TC
Location: 13796 - 15214 (+)
Gene ID: k141_22413_12
Type: pfam
Location: 15226 - 16347 (+)
Gene ID: k141_22413_13
Type: CAZyme
Location: 16348 - 17301 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Roseburia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_22413_4 vegetarian > vegan 1.08081 0.00385

🧭 Explore Read Mapping of CGC

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