Cluster: CGMR041908_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR041908
- CGC Family ID: CGCFAM_00450
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_198215 | k141_198215_1 | 2 | 550 | + | GT4 |
| CAZyme | k141_198215 | k141_198215_2 | 554 | 1660 | + | GT4 |
| CAZyme | k141_198215 | k141_198215_3 | 1697 | 2827 | + | GT4 |
| pfam | k141_198215 | k141_198215_4 | 2861 | 3766 | + | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| pfam | k141_198215 | k141_198215_5 | 3870 | 4811 | + | Glycos_transf_2 |
| CAZyme | k141_198215 | k141_198215_6 | 4978 | 5778 | + | GT2 |
| NULL(UNKNOWN) | k141_198215 | k141_198215_7 | 5795 | 7939 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_198215 | k141_198215_8 | 8031 | 11165 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_198215 | k141_198215_9 | 11175 | 12542 | + | 9.B.18.1.3 |
| CAZyme | k141_198215 | k141_198215_10 | 12542 | 13360 | + | GT2 |
| pfam | k141_198215 | k141_198215_11 | 13415 | 14224 | + | LicD |
| pfam | k141_198215 | k141_198215_12 | 14243 | 15514 | + | Glyphos_transf |
| TC | k141_198215 | k141_198215_13 | 15516 | 16301 | + | 3.A.1.103.1 |
| TC | k141_198215 | k141_198215_14 | 16311 | 17108 | + | 3.A.1.103.5 |
Gene ID: k141_198215_1
Type: CAZyme
Location: 2 - 550 (+)
Type: CAZyme
Location: 2 - 550 (+)
Gene ID: k141_198215_2
Type: CAZyme
Location: 554 - 1660 (+)
Type: CAZyme
Location: 554 - 1660 (+)
Gene ID: k141_198215_3
Type: CAZyme
Location: 1697 - 2827 (+)
Type: CAZyme
Location: 1697 - 2827 (+)
Gene ID: k141_198215_4
Type: pfam
Location: 2861 - 3766 (+)
Type: pfam
Location: 2861 - 3766 (+)
Gene ID: k141_198215_5
Type: pfam
Location: 3870 - 4811 (+)
Type: pfam
Location: 3870 - 4811 (+)
Gene ID: k141_198215_6
Type: CAZyme
Location: 4978 - 5778 (+)
Type: CAZyme
Location: 4978 - 5778 (+)
Gene ID: k141_198215_7
Type:
Location: 5795 - 7939 (+)
Type:
Location: 5795 - 7939 (+)
Gene ID: k141_198215_8
Type:
Location: 8031 - 11165 (+)
Type:
Location: 8031 - 11165 (+)
Gene ID: k141_198215_9
Type: TC
Location: 11175 - 12542 (+)
Type: TC
Location: 11175 - 12542 (+)
Gene ID: k141_198215_10
Type: CAZyme
Location: 12542 - 13360 (+)
Type: CAZyme
Location: 12542 - 13360 (+)
Gene ID: k141_198215_11
Type: pfam
Location: 13415 - 14224 (+)
Type: pfam
Location: 13415 - 14224 (+)
Gene ID: k141_198215_12
Type: pfam
Location: 14243 - 15514 (+)
Type: pfam
Location: 14243 - 15514 (+)
Gene ID: k141_198215_13
Type: TC
Location: 15516 - 16301 (+)
Type: TC
Location: 15516 - 16301 (+)
Gene ID: k141_198215_14
Type: TC
Location: 16311 - 17108 (+)
Type: TC
Location: 16311 - 17108 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.