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Cluster: CGMR041270_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_57000 k141_57000_24 18851 20218 - 2.A.66.1.26
pfam k141_57000 k141_57000_25 20426 20884 + Rubrerythrin | Coat_F
TF k141_57000 k141_57000_26 21657 22637 + LacI
TC k141_57000 k141_57000_27 22983 24212 + 3.A.1.1.7
TC k141_57000 k141_57000_28 24392 25270 + 3.A.1.1.37
TC k141_57000 k141_57000_29 25321 26151 + 3.A.1.1.25
CAZyme k141_57000 k141_57000_30 26170 27651 + GH32
CAZyme k141_57000 k141_57000_31 27717 29054 + GH91
pfam k141_57000 k141_57000_32 29228 29482 - DUF6783
TF k141_57000 k141_57000_33 29479 30720 - HTH_AraC
CAZyme k141_57000 k141_57000_34 30945 32111 + GH5_44
TC k141_57000 k141_57000_35 32192 33577 + 2.A.2.3.3
CAZyme k141_57000 k141_57000_36 33877 35526 + GH32
pfam k141_57000 k141_57000_37 35623 36990 + MatE | MatE
CAZyme k141_57000 k141_57000_38 37229 39259 - GH120
TF k141_57000 k141_57000_39 39521 40243 + GntR
peptidase k141_57000 k141_57000_40 40513 42084 + M38.UNW
TC k141_57000 k141_57000_41 42120 43541 + 2.A.118.1.2
Gene ID: k141_57000_24
Type: TC
Location: 18851 - 20218 (-)
Gene ID: k141_57000_25
Type: pfam
Location: 20426 - 20884 (+)
Gene ID: k141_57000_26
Type: TF
Location: 21657 - 22637 (+)
Gene ID: k141_57000_27
Type: TC
Location: 22983 - 24212 (+)
Gene ID: k141_57000_28
Type: TC
Location: 24392 - 25270 (+)
Gene ID: k141_57000_29
Type: TC
Location: 25321 - 26151 (+)
Gene ID: k141_57000_30
Type: CAZyme
Location: 26170 - 27651 (+)
Gene ID: k141_57000_31
Type: CAZyme
Location: 27717 - 29054 (+)
Gene ID: k141_57000_32
Type: pfam
Location: 29228 - 29482 (-)
Gene ID: k141_57000_33
Type: TF
Location: 29479 - 30720 (-)
Gene ID: k141_57000_34
Type: CAZyme
Location: 30945 - 32111 (+)
Gene ID: k141_57000_35
Type: TC
Location: 32192 - 33577 (+)
Gene ID: k141_57000_36
Type: CAZyme
Location: 33877 - 35526 (+)
Gene ID: k141_57000_37
Type: pfam
Location: 35623 - 36990 (+)
Gene ID: k141_57000_38
Type: CAZyme
Location: 37229 - 39259 (-)
Gene ID: k141_57000_39
Type: TF
Location: 39521 - 40243 (+)
Gene ID: k141_57000_40
Type: peptidase
Location: 40513 - 42084 (+)
Gene ID: k141_57000_41
Type: TC
Location: 42120 - 43541 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_57000_27 vegan > omnivore 1.70536 0.00604
k141_57000_28 vegan > omnivore 1.58316 0.00604
k141_57000_29 vegan > omnivore 2.05848 0.00604
k141_57000_30 vegan > omnivore 1.27689 0.00604
k141_57000_34 vegetarian > vegan 1.10815 0.04482
k141_57000_39 vegan > omnivore 2.64638 0.00604
k141_57000_40 vegan > omnivore 1.69035 0.00604

🧭 Explore Read Mapping of CGC

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