Cluster: CGMR040515_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR040515
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_421117 | k141_421117_1 | 732 | 1112 | + | 3.D.1.8.1 |
| TC | k141_421117 | k141_421117_2 | 1088 | 1765 | + | 3.D.1.6.3 |
| pfam | k141_421117 | k141_421117_3 | 1765 | 2313 | + | Complex1_30kDa |
| TC | k141_421117 | k141_421117_4 | 2319 | 3482 | + | 3.D.1.5.1 |
| TC | k141_421117 | k141_421117_5 | 3488 | 4462 | + | 3.D.1.5.1 |
| STP | k141_421117 | k141_421117_6 | 4475 | 5077 | + | Fer4 | Fer4 |
| TC | k141_421117 | k141_421117_7 | 5077 | 5580 | + | 3.D.9.1.1 |
| pfam | k141_421117 | k141_421117_8 | 5580 | 5891 | + | Oxidored_q2 |
| TC | k141_421117 | k141_421117_9 | 5894 | 7381 | + | 3.D.1.4.1 |
| NULL(UNKNOWN) | k141_421117 | k141_421117_10 | 7394 | 7651 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_421117 | k141_421117_11 | 7638 | 9467 | + | 2.A.63.1.2 |
| TC | k141_421117 | k141_421117_12 | 9506 | 11065 | + | 3.D.1.2.1 |
| TC | k141_421117 | k141_421117_13 | 11058 | 12491 | + | 3.D.9.1.1 |
| CAZyme | k141_421117 | k141_421117_14 | 12811 | 15468 | - | GT51 |
Gene ID: k141_421117_1
Type: TC
Location: 732 - 1112 (+)
Type: TC
Location: 732 - 1112 (+)
Gene ID: k141_421117_2
Type: TC
Location: 1088 - 1765 (+)
Type: TC
Location: 1088 - 1765 (+)
Gene ID: k141_421117_3
Type: pfam
Location: 1765 - 2313 (+)
Type: pfam
Location: 1765 - 2313 (+)
Gene ID: k141_421117_4
Type: TC
Location: 2319 - 3482 (+)
Type: TC
Location: 2319 - 3482 (+)
Gene ID: k141_421117_5
Type: TC
Location: 3488 - 4462 (+)
Type: TC
Location: 3488 - 4462 (+)
Gene ID: k141_421117_6
Type: STP
Location: 4475 - 5077 (+)
Type: STP
Location: 4475 - 5077 (+)
Gene ID: k141_421117_7
Type: TC
Location: 5077 - 5580 (+)
Type: TC
Location: 5077 - 5580 (+)
Gene ID: k141_421117_8
Type: pfam
Location: 5580 - 5891 (+)
Type: pfam
Location: 5580 - 5891 (+)
Gene ID: k141_421117_9
Type: TC
Location: 5894 - 7381 (+)
Type: TC
Location: 5894 - 7381 (+)
Gene ID: k141_421117_10
Type:
Location: 7394 - 7651 (+)
Type:
Location: 7394 - 7651 (+)
Gene ID: k141_421117_11
Type: TC
Location: 7638 - 9467 (+)
Type: TC
Location: 7638 - 9467 (+)
Gene ID: k141_421117_12
Type: TC
Location: 9506 - 11065 (+)
Type: TC
Location: 9506 - 11065 (+)
Gene ID: k141_421117_13
Type: TC
Location: 11058 - 12491 (+)
Type: TC
Location: 11058 - 12491 (+)
Gene ID: k141_421117_14
Type: CAZyme
Location: 12811 - 15468 (-)
Type: CAZyme
Location: 12811 - 15468 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Frigididesulfovibrio
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.