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Cluster: CGMR039260_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_183397 k141_183397_12 10104 11006 + GH43
TF k141_183397 k141_183397_13 10997 11875 - HTH_AraC | HTH_AraC
STP k141_183397 k141_183397_14 12094 13863 + SBP_bac_1 | SBP_bac_1
TC k141_183397 k141_183397_15 13876 14835 + 3.A.1.1.11
TC k141_183397 k141_183397_16 14828 15727 + 3.A.1.1.34
CAZyme k141_183397 k141_183397_17 15859 17685 + GH43_33
NULL(UNKNOWN) k141_183397 k141_183397_18 17707 21798 + NULL(UNKNOWN)
[View Structural Homologs]
pfam k141_183397 k141_183397_19 21801 23375 + SASA | Flg_new_2
CAZyme k141_183397 k141_183397_20 23995 25119 + GT4
Gene ID: k141_183397_12
Type: CAZyme
Location: 10104 - 11006 (+)
Gene ID: k141_183397_13
Type: TF
Location: 10997 - 11875 (-)
Gene ID: k141_183397_14
Type: STP
Location: 12094 - 13863 (+)
Gene ID: k141_183397_15
Type: TC
Location: 13876 - 14835 (+)
Gene ID: k141_183397_16
Type: TC
Location: 14828 - 15727 (+)
Gene ID: k141_183397_17
Type: CAZyme
Location: 15859 - 17685 (+)
Gene ID: k141_183397_18
Type:
Location: 17707 - 21798 (+)
Gene ID: k141_183397_19
Type: pfam
Location: 21801 - 23375 (+)
Gene ID: k141_183397_20
Type: CAZyme
Location: 23995 - 25119 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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