Cluster: CGMR038039_CGC26
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR038039
- CGC Family ID: CGCFAM_01401
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_25631 | k141_25631_19 | 18410 | 19627 | - | GH109 |
| TF | k141_25631 | k141_25631_20 | 19823 | 20671 | + | HTH_AraC |
| pfam | k141_25631 | k141_25631_21 | 20652 | 21503 | - | AP_endonuc_2 |
| CAZyme | k141_25631 | k141_25631_22 | 21557 | 22618 | - | GH179 |
| TF | k141_25631 | k141_25631_23 | 22807 | 23640 | + | HTH_AraC | HTH_AraC |
| TC | k141_25631 | k141_25631_24 | 23688 | 24680 | - | 8.A.5.1.3 |
| STP | k141_25631 | k141_25631_25 | 24750 | 25730 | - | Peripla_BP_1 |
| TC | k141_25631 | k141_25631_26 | 25860 | 27590 | - | 8.A.59.2.1 |
| TF | k141_25631 | k141_25631_27 | 27611 | 29203 | - | HTH_AraC |
| pfam | k141_25631 | k141_25631_28 | 29305 | 29664 | - | Flg_new |
| TC | k141_25631 | k141_25631_29 | 30624 | 31709 | - | 3.A.1.2.3 |
| TC | k141_25631 | k141_25631_30 | 31735 | 33258 | - | 3.A.1.2.3 |
| TC | k141_25631 | k141_25631_31 | 33362 | 34447 | - | 3.A.1.2.3 |
Gene ID: k141_25631_19
Type: CAZyme
Location: 18410 - 19627 (-)
Type: CAZyme
Location: 18410 - 19627 (-)
Gene ID: k141_25631_20
Type: TF
Location: 19823 - 20671 (+)
Type: TF
Location: 19823 - 20671 (+)
Gene ID: k141_25631_21
Type: pfam
Location: 20652 - 21503 (-)
Type: pfam
Location: 20652 - 21503 (-)
Gene ID: k141_25631_22
Type: CAZyme
Location: 21557 - 22618 (-)
Type: CAZyme
Location: 21557 - 22618 (-)
Gene ID: k141_25631_23
Type: TF
Location: 22807 - 23640 (+)
Type: TF
Location: 22807 - 23640 (+)
Gene ID: k141_25631_24
Type: TC
Location: 23688 - 24680 (-)
Type: TC
Location: 23688 - 24680 (-)
Gene ID: k141_25631_25
Type: STP
Location: 24750 - 25730 (-)
Type: STP
Location: 24750 - 25730 (-)
Gene ID: k141_25631_26
Type: TC
Location: 25860 - 27590 (-)
Type: TC
Location: 25860 - 27590 (-)
Gene ID: k141_25631_27
Type: TF
Location: 27611 - 29203 (-)
Type: TF
Location: 27611 - 29203 (-)
Gene ID: k141_25631_28
Type: pfam
Location: 29305 - 29664 (-)
Type: pfam
Location: 29305 - 29664 (-)
Gene ID: k141_25631_29
Type: TC
Location: 30624 - 31709 (-)
Type: TC
Location: 30624 - 31709 (-)
Gene ID: k141_25631_30
Type: TC
Location: 31735 - 33258 (-)
Type: TC
Location: 31735 - 33258 (-)
Gene ID: k141_25631_31
Type: TC
Location: 33362 - 34447 (-)
Type: TC
Location: 33362 - 34447 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
RGIG1988
Species
RGIG1988 sp934462715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.