Cluster: CGMR038039_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR038039
- CGC Family ID: CGCFAM_02801
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_86943 | k141_86943_23 | 38934 | 40637 | - | 8.A.59.2.1 |
| TF | k141_86943 | k141_86943_24 | 40634 | 42106 | - | HTH_AraC | HTH_AraC |
| TC | k141_86943 | k141_86943_25 | 42343 | 43293 | + | 3.A.1.1.29 |
| TC | k141_86943 | k141_86943_26 | 43342 | 44220 | + | 3.A.1.1.29 |
| STP | k141_86943 | k141_86943_27 | 44315 | 45766 | + | SBP_bac_1 |
| pfam | k141_86943 | k141_86943_28 | 45779 | 47044 | + | Big_5 |
| CAZyme | k141_86943 | k141_86943_29 | 47054 | 50185 | + | GH141 |
| pfam | k141_86943 | k141_86943_30 | 50247 | 52172 | + | SLH | SLH | SLH |
| pfam | k141_86943 | k141_86943_31 | 52189 | 54765 | + | SLH |
| CAZyme | k141_86943 | k141_86943_32 | 54803 | 57031 | + | GH141 |
| CAZyme | k141_86943 | k141_86943_33 | 57013 | 60333 | + | CE17 |
| CAZyme | k141_86943 | k141_86943_34 | 60606 | 62657 | + | GH3 |
| pfam | k141_86943 | k141_86943_35 | 62778 | 65102 | + | Glyco_hydro_101 |
| peptidase | k141_86943 | k141_86943_36 | 65123 | 65890 | + | S09.UPW |
| CAZyme | k141_86943 | k141_86943_37 | 65927 | 68095 | + | GH31_16 |
Gene ID: k141_86943_23
Type: TC
Location: 38934 - 40637 (-)
Type: TC
Location: 38934 - 40637 (-)
Gene ID: k141_86943_24
Type: TF
Location: 40634 - 42106 (-)
Type: TF
Location: 40634 - 42106 (-)
Gene ID: k141_86943_25
Type: TC
Location: 42343 - 43293 (+)
Type: TC
Location: 42343 - 43293 (+)
Gene ID: k141_86943_26
Type: TC
Location: 43342 - 44220 (+)
Type: TC
Location: 43342 - 44220 (+)
Gene ID: k141_86943_27
Type: STP
Location: 44315 - 45766 (+)
Type: STP
Location: 44315 - 45766 (+)
Gene ID: k141_86943_28
Type: pfam
Location: 45779 - 47044 (+)
Type: pfam
Location: 45779 - 47044 (+)
Gene ID: k141_86943_29
Type: CAZyme
Location: 47054 - 50185 (+)
Type: CAZyme
Location: 47054 - 50185 (+)
Gene ID: k141_86943_30
Type: pfam
Location: 50247 - 52172 (+)
Type: pfam
Location: 50247 - 52172 (+)
Gene ID: k141_86943_31
Type: pfam
Location: 52189 - 54765 (+)
Type: pfam
Location: 52189 - 54765 (+)
Gene ID: k141_86943_32
Type: CAZyme
Location: 54803 - 57031 (+)
Type: CAZyme
Location: 54803 - 57031 (+)
Gene ID: k141_86943_33
Type: CAZyme
Location: 57013 - 60333 (+)
Type: CAZyme
Location: 57013 - 60333 (+)
Gene ID: k141_86943_34
Type: CAZyme
Location: 60606 - 62657 (+)
Type: CAZyme
Location: 60606 - 62657 (+)
Gene ID: k141_86943_35
Type: pfam
Location: 62778 - 65102 (+)
Type: pfam
Location: 62778 - 65102 (+)
Gene ID: k141_86943_36
Type: peptidase
Location: 65123 - 65890 (+)
Type: peptidase
Location: 65123 - 65890 (+)
Gene ID: k141_86943_37
Type: CAZyme
Location: 65927 - 68095 (+)
Type: CAZyme
Location: 65927 - 68095 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
RGIG1988
Species
RGIG1988 sp934462715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.