Cluster: CGMR038039_CGC11
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR038039
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_127784 | k141_127784_2 | 680 | 3607 | + | 1.C.39.4.6 |
| pfam | k141_127784 | k141_127784_3 | 3624 | 4568 | + | BPD_transp_1 |
| TC | k141_127784 | k141_127784_4 | 4590 | 5477 | + | 3.A.1.1.29 |
| STP | k141_127784 | k141_127784_5 | 5534 | 6964 | + | SBP_bac_1 |
| CAZyme | k141_127784 | k141_127784_6 | 6977 | 9478 | + | GH141 |
| CAZyme | k141_127784 | k141_127784_7 | 9549 | 12743 | + | GH141 |
| pfam | k141_127784 | k141_127784_8 | 12849 | 14534 | + | SLH | SLH | SLH |
| pfam | k141_127784 | k141_127784_9 | 14549 | 17467 | + | SLH | SLH |
| CAZyme | k141_127784 | k141_127784_10 | 17610 | 19691 | + | CBM67 | GH78 |
| CAZyme | k141_127784 | k141_127784_11 | 19678 | 22044 | + | GH3 |
| CAZyme | k141_127784 | k141_127784_12 | 22207 | 23568 | + | GH39 |
| CAZyme | k141_127784 | k141_127784_13 | 23673 | 24533 | + | CE4 |
| TC | k141_127784 | k141_127784_14 | 24609 | 26297 | - | 8.A.59.2.1 |
| TF | k141_127784 | k141_127784_15 | 26302 | 27525 | - | HTH_AraC | HTH_AraC |
| TC | k141_127784 | k141_127784_16 | 27800 | 28741 | + | 3.A.1.1.9 |
| TC | k141_127784 | k141_127784_17 | 28760 | 29641 | + | 3.A.1.1.29 |
Gene ID: k141_127784_2
Type: TC
Location: 680 - 3607 (+)
Type: TC
Location: 680 - 3607 (+)
Gene ID: k141_127784_3
Type: pfam
Location: 3624 - 4568 (+)
Type: pfam
Location: 3624 - 4568 (+)
Gene ID: k141_127784_4
Type: TC
Location: 4590 - 5477 (+)
Type: TC
Location: 4590 - 5477 (+)
Gene ID: k141_127784_5
Type: STP
Location: 5534 - 6964 (+)
Type: STP
Location: 5534 - 6964 (+)
Gene ID: k141_127784_6
Type: CAZyme
Location: 6977 - 9478 (+)
Type: CAZyme
Location: 6977 - 9478 (+)
Gene ID: k141_127784_7
Type: CAZyme
Location: 9549 - 12743 (+)
Type: CAZyme
Location: 9549 - 12743 (+)
Gene ID: k141_127784_8
Type: pfam
Location: 12849 - 14534 (+)
Type: pfam
Location: 12849 - 14534 (+)
Gene ID: k141_127784_9
Type: pfam
Location: 14549 - 17467 (+)
Type: pfam
Location: 14549 - 17467 (+)
Gene ID: k141_127784_10
Type: CAZyme
Location: 17610 - 19691 (+)
Type: CAZyme
Location: 17610 - 19691 (+)
Gene ID: k141_127784_11
Type: CAZyme
Location: 19678 - 22044 (+)
Type: CAZyme
Location: 19678 - 22044 (+)
Gene ID: k141_127784_12
Type: CAZyme
Location: 22207 - 23568 (+)
Type: CAZyme
Location: 22207 - 23568 (+)
Gene ID: k141_127784_13
Type: CAZyme
Location: 23673 - 24533 (+)
Type: CAZyme
Location: 23673 - 24533 (+)
Gene ID: k141_127784_14
Type: TC
Location: 24609 - 26297 (-)
Type: TC
Location: 24609 - 26297 (-)
Gene ID: k141_127784_15
Type: TF
Location: 26302 - 27525 (-)
Type: TF
Location: 26302 - 27525 (-)
Gene ID: k141_127784_16
Type: TC
Location: 27800 - 28741 (+)
Type: TC
Location: 27800 - 28741 (+)
Gene ID: k141_127784_17
Type: TC
Location: 28760 - 29641 (+)
Type: TC
Location: 28760 - 29641 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
RGIG1988
Species
RGIG1988 sp934462715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.