Cluster: CGMR037539_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR037539
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_55011 | k141_55011_65 | 77655 | 77993 | - | 4.A.3.1.2 |
| TF | k141_55011 | k141_55011_66 | 78208 | 79212 | - | LacI |
| TC | k141_55011 | k141_55011_67 | 79570 | 81345 | + | 4.A.3.1.1 |
| CAZyme | k141_55011 | k141_55011_68 | 81412 | 82851 | + | GH1 |
| TF | k141_55011 | k141_55011_69 | 83118 | 84155 | - | LacI |
| CAZyme | k141_55011 | k141_55011_70 | 84497 | 85939 | + | GH1 |
| TC | k141_55011 | k141_55011_71 | 86116 | 87876 | + | 4.A.3.1.1 |
Gene ID: k141_55011_65
Type: TC
Location: 77655 - 77993 (-)
Type: TC
Location: 77655 - 77993 (-)
Gene ID: k141_55011_66
Type: TF
Location: 78208 - 79212 (-)
Type: TF
Location: 78208 - 79212 (-)
Gene ID: k141_55011_67
Type: TC
Location: 79570 - 81345 (+)
Type: TC
Location: 79570 - 81345 (+)
Gene ID: k141_55011_68
Type: CAZyme
Location: 81412 - 82851 (+)
Type: CAZyme
Location: 81412 - 82851 (+)
Gene ID: k141_55011_69
Type: TF
Location: 83118 - 84155 (-)
Type: TF
Location: 83118 - 84155 (-)
Gene ID: k141_55011_70
Type: CAZyme
Location: 84497 - 85939 (+)
Type: CAZyme
Location: 84497 - 85939 (+)
Gene ID: k141_55011_71
Type: TC
Location: 86116 - 87876 (+)
Type: TC
Location: 86116 - 87876 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.