Cluster: CGMR037539_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: CGMR037539
- CGC Family ID: CGCFAM_00014
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_148175 | k141_148175_89 | 92679 | 94373 | + | 4.A.3.1.1 |
| pfam | k141_148175 | k141_148175_90 | 94733 | 95038 | - | ParE_toxin |
| NULL(UNKNOWN) | k141_148175 | k141_148175_91 | 95028 | 95294 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_148175 | k141_148175_92 | 95670 | 97091 | - | GH1 |
| TC | k141_148175 | k141_148175_93 | 97167 | 98945 | - | 4.A.3.1.1 |
Gene ID: k141_148175_89
Type: TC
Location: 92679 - 94373 (+)
Type: TC
Location: 92679 - 94373 (+)
Gene ID: k141_148175_90
Type: pfam
Location: 94733 - 95038 (-)
Type: pfam
Location: 94733 - 95038 (-)
Gene ID: k141_148175_91
Type:
Location: 95028 - 95294 (-)
Type:
Location: 95028 - 95294 (-)
Gene ID: k141_148175_92
Type: CAZyme
Location: 95670 - 97091 (-)
Type: CAZyme
Location: 95670 - 97091 (-)
Gene ID: k141_148175_93
Type: TC
Location: 97167 - 98945 (-)
Type: TC
Location: 97167 - 98945 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.