Cluster: CGMR037539_CGC17
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR037539
- CGC Family ID: CGCFAM_00182
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_129952 | k141_129952_55 | 63178 | 64395 | - | GT4 |
| pfam | k141_129952 | k141_129952_56 | 64410 | 65174 | - | BcrAD_BadFG |
| pfam | k141_129952 | k141_129952_57 | 65329 | 66492 | - | HGD-D |
| TC | k141_129952 | k141_129952_58 | 66568 | 67353 | - | 3.A.1.5.36 |
| TC | k141_129952 | k141_129952_59 | 67343 | 68338 | - | 3.A.1.5.35 |
| TC | k141_129952 | k141_129952_60 | 68342 | 69172 | - | 3.A.1.5.39 |
| TC | k141_129952 | k141_129952_61 | 69169 | 70122 | - | 3.A.1.5.39 |
| TC | k141_129952 | k141_129952_62 | 70211 | 71821 | - | 3.A.1.5.11 |
| pfam | k141_129952 | k141_129952_63 | 72007 | 73290 | - | HGD-D |
| TC | k141_129952 | k141_129952_64 | 73722 | 74792 | - | 3.A.1.1.3 |
| TC | k141_129952 | k141_129952_65 | 74796 | 76238 | - | 3.A.1.8.1 |
Gene ID: k141_129952_55
Type: CAZyme
Location: 63178 - 64395 (-)
Type: CAZyme
Location: 63178 - 64395 (-)
Gene ID: k141_129952_56
Type: pfam
Location: 64410 - 65174 (-)
Type: pfam
Location: 64410 - 65174 (-)
Gene ID: k141_129952_57
Type: pfam
Location: 65329 - 66492 (-)
Type: pfam
Location: 65329 - 66492 (-)
Gene ID: k141_129952_58
Type: TC
Location: 66568 - 67353 (-)
Type: TC
Location: 66568 - 67353 (-)
Gene ID: k141_129952_59
Type: TC
Location: 67343 - 68338 (-)
Type: TC
Location: 67343 - 68338 (-)
Gene ID: k141_129952_60
Type: TC
Location: 68342 - 69172 (-)
Type: TC
Location: 68342 - 69172 (-)
Gene ID: k141_129952_61
Type: TC
Location: 69169 - 70122 (-)
Type: TC
Location: 69169 - 70122 (-)
Gene ID: k141_129952_62
Type: TC
Location: 70211 - 71821 (-)
Type: TC
Location: 70211 - 71821 (-)
Gene ID: k141_129952_63
Type: pfam
Location: 72007 - 73290 (-)
Type: pfam
Location: 72007 - 73290 (-)
Gene ID: k141_129952_64
Type: TC
Location: 73722 - 74792 (-)
Type: TC
Location: 73722 - 74792 (-)
Gene ID: k141_129952_65
Type: TC
Location: 74796 - 76238 (-)
Type: TC
Location: 74796 - 76238 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_129952_55 | vegan > omnivore | 1.62969 | 0.00953 |
| k141_129952_58 | vegan > omnivore | 2.90734 | 0.00953 |
| k141_129952_58 | vegetarian > omnivore | 1.07061 | 0.04172 |
| k141_129952_59 | vegan > omnivore | 1.95144 | 0.00953 |
| k141_129952_60 | vegan > omnivore | 3.00998 | 0.00953 |
| k141_129952_60 | vegetarian > omnivore | 1.21178 | 0.04172 |
| k141_129952_61 | vegan > omnivore | 2.81659 | 0.00953 |
| k141_129952_61 | vegetarian > omnivore | 1.16678 | 0.04172 |
| k141_129952_62 | vegan > omnivore | 3.34472 | 0.00953 |
| k141_129952_62 | vegetarian > omnivore | 1.04739 | 0.04172 |