Cluster: CGMR037507_CGC26
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR037507
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_128156 | k141_128156_9 | 8483 | 10144 | + | 2.A.81.1.5 |
| TF | k141_128156 | k141_128156_10 | 10115 | 10858 | - | GntR |
| TC | k141_128156 | k141_128156_11 | 11080 | 12702 | + | 4.A.1.1.10 |
| CAZyme | k141_128156 | k141_128156_12 | 12699 | 14021 | + | GH4 |
| TC | k141_128156 | k141_128156_13 | 14114 | 14461 | + | 9.B.51.1.1 |
| pfam | k141_128156 | k141_128156_14 | 14451 | 14798 | + | DUF202 |
| STP | k141_128156 | k141_128156_15 | 14882 | 16168 | - | PALP |
| TC | k141_128156 | k141_128156_16 | 16186 | 17523 | - | 2.A.8.1.5 |
| TF | k141_128156 | k141_128156_17 | 17728 | 18654 | + | HTH_1 |
| CAZyme | k141_128156 | k141_128156_18 | 18739 | 19827 | + | GH5_25 |
| TC | k141_128156 | k141_128156_19 | 19730 | 20914 | - | 2.A.1.2.9 |
| TC | k141_128156 | k141_128156_20 | 21090 | 21923 | - | 2.A.7.31.3 |
Gene ID: k141_128156_9
Type: TC
Location: 8483 - 10144 (+)
Type: TC
Location: 8483 - 10144 (+)
Gene ID: k141_128156_10
Type: TF
Location: 10115 - 10858 (-)
Type: TF
Location: 10115 - 10858 (-)
Gene ID: k141_128156_11
Type: TC
Location: 11080 - 12702 (+)
Type: TC
Location: 11080 - 12702 (+)
Gene ID: k141_128156_12
Type: CAZyme
Location: 12699 - 14021 (+)
Type: CAZyme
Location: 12699 - 14021 (+)
Gene ID: k141_128156_13
Type: TC
Location: 14114 - 14461 (+)
Type: TC
Location: 14114 - 14461 (+)
Gene ID: k141_128156_14
Type: pfam
Location: 14451 - 14798 (+)
Type: pfam
Location: 14451 - 14798 (+)
Gene ID: k141_128156_15
Type: STP
Location: 14882 - 16168 (-)
Type: STP
Location: 14882 - 16168 (-)
Gene ID: k141_128156_16
Type: TC
Location: 16186 - 17523 (-)
Type: TC
Location: 16186 - 17523 (-)
Gene ID: k141_128156_17
Type: TF
Location: 17728 - 18654 (+)
Type: TF
Location: 17728 - 18654 (+)
Gene ID: k141_128156_18
Type: CAZyme
Location: 18739 - 19827 (+)
Type: CAZyme
Location: 18739 - 19827 (+)
Gene ID: k141_128156_19
Type: TC
Location: 19730 - 20914 (-)
Type: TC
Location: 19730 - 20914 (-)
Gene ID: k141_128156_20
Type: TC
Location: 21090 - 21923 (-)
Type: TC
Location: 21090 - 21923 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter roggenkampii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_128156_10 | vegetarian > vegan | 1.00492 | 0.04164 |
| k141_128156_14 | vegetarian > omnivore | 1.43190 | 0.03173 |
| k141_128156_15 | vegetarian > omnivore | 1.53172 | 0.01389 |
| k141_128156_15 | vegetarian > vegan | 1.40788 | 0.01430 |
| k141_128156_16 | vegetarian > omnivore | 1.61318 | 0.03173 |
| k141_128156_20 | vegetarian > omnivore | 1.66128 | 0.03173 |
| k141_128156_20 | vegetarian > vegan | 1.17251 | 0.03651 |