Cluster: CGMR037507_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate: galactan
- Genome ID: CGMR037507
- CGC Family ID: CGCFAM_00933
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_244858 | k141_244858_2 | 776 | 1411 | - | 5.A.3.2.1 |
| TC | k141_244858 | k141_244858_3 | 1408 | 2310 | - | 5.A.3.2.1 |
| TC | k141_244858 | k141_244858_4 | 2323 | 4737 | - | 5.A.3.2.1 |
| TC | k141_244858 | k141_244858_5 | 4786 | 5373 | - | 5.A.3.2.1 |
| pfam | k141_244858 | k141_244858_6 | 5745 | 6581 | + | FdhD-NarQ |
| pfam | k141_244858 | k141_244858_7 | 6696 | 6908 | + | YdgH_BhsA-like |
| TC | k141_244858 | k141_244858_8 | 6949 | 7272 | - | 2.A.78.2.3 |
| TC | k141_244858 | k141_244858_9 | 7272 | 7931 | - | 2.A.78.2.3 |
| TF | k141_244858 | k141_244858_10 | 8034 | 8582 | + | HTH_3 |
| TF | k141_244858 | k141_244858_11 | 8600 | 9595 | + | LacI |
| CAZyme | k141_244858 | k141_244858_12 | 9699 | 11822 | + | GH36 |
| TC | k141_244858 | k141_244858_13 | 11867 | 13132 | + | 2.A.1.5.4 |
Gene ID: k141_244858_2
Type: TC
Location: 776 - 1411 (-)
Type: TC
Location: 776 - 1411 (-)
Gene ID: k141_244858_3
Type: TC
Location: 1408 - 2310 (-)
Type: TC
Location: 1408 - 2310 (-)
Gene ID: k141_244858_4
Type: TC
Location: 2323 - 4737 (-)
Type: TC
Location: 2323 - 4737 (-)
Gene ID: k141_244858_5
Type: TC
Location: 4786 - 5373 (-)
Type: TC
Location: 4786 - 5373 (-)
Gene ID: k141_244858_6
Type: pfam
Location: 5745 - 6581 (+)
Type: pfam
Location: 5745 - 6581 (+)
Gene ID: k141_244858_7
Type: pfam
Location: 6696 - 6908 (+)
Type: pfam
Location: 6696 - 6908 (+)
Gene ID: k141_244858_8
Type: TC
Location: 6949 - 7272 (-)
Type: TC
Location: 6949 - 7272 (-)
Gene ID: k141_244858_9
Type: TC
Location: 7272 - 7931 (-)
Type: TC
Location: 7272 - 7931 (-)
Gene ID: k141_244858_10
Type: TF
Location: 8034 - 8582 (+)
Type: TF
Location: 8034 - 8582 (+)
Gene ID: k141_244858_11
Type: TF
Location: 8600 - 9595 (+)
Type: TF
Location: 8600 - 9595 (+)
Gene ID: k141_244858_12
Type: CAZyme
Location: 9699 - 11822 (+)
Type: CAZyme
Location: 9699 - 11822 (+)
Gene ID: k141_244858_13
Type: TC
Location: 11867 - 13132 (+)
Type: TC
Location: 11867 - 13132 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter roggenkampii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_244858_7 | vegetarian > omnivore | 1.54033 | 0.03173 |
| k141_244858_8 | vegetarian > omnivore | 1.91034 | 0.02726 |
| k141_244858_11 | vegetarian > omnivore | 1.00337 | 0.03173 |
| k141_244858_11 | vegetarian > vegan | 1.35567 | 0.04164 |
| k141_244858_13 | vegetarian > omnivore | 2.25008 | 0.03173 |
| k141_244858_13 | vegetarian > vegan | 1.29225 | 0.04164 |