Cluster: CGMR037040_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR037040
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_40980 | k141_40980_6 | 4236 | 4541 | + | 9.B.21.2.1 |
| TC | k141_40980 | k141_40980_7 | 4541 | 6406 | + | 2.A.16.2.2 |
| pfam | k141_40980 | k141_40980_8 | 6448 | 7989 | - | PFL-like | YjjI-like |
| TC | k141_40980 | k141_40980_9 | 8180 | 8845 | + | 2.A.115.2.7 |
| CAZyme | k141_40980 | k141_40980_10 | 8795 | 9823 | - | GT9 |
Gene ID: k141_40980_6
Type: TC
Location: 4236 - 4541 (+)
Type: TC
Location: 4236 - 4541 (+)
Gene ID: k141_40980_7
Type: TC
Location: 4541 - 6406 (+)
Type: TC
Location: 4541 - 6406 (+)
Gene ID: k141_40980_8
Type: pfam
Location: 6448 - 7989 (-)
Type: pfam
Location: 6448 - 7989 (-)
Gene ID: k141_40980_9
Type: TC
Location: 8180 - 8845 (+)
Type: TC
Location: 8180 - 8845 (+)
Gene ID: k141_40980_10
Type: CAZyme
Location: 8795 - 9823 (-)
Type: CAZyme
Location: 8795 - 9823 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_40980_9 | vegan > omnivore | 1.36425 | 0.00581 |
| k141_40980_9 | vegetarian > omnivore | 1.21257 | 0.00573 |