Cluster: CGMR037040_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR037040
- CGC Family ID: CGCFAM_05008
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_7892 | k141_7892_20 | 19953 | 21362 | + | 2.A.1.3.51 |
| TC | k141_7892 | k141_7892_21 | 21532 | 23178 | + | 3.A.1.5.27 |
| pfam | k141_7892 | k141_7892_22 | 23245 | 23877 | + | PNPOx_N | PNP_phzG_C | Pyridox_oxase_2 |
| NULL(UNKNOWN) | k141_7892 | k141_7892_23 | 24154 | 24834 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_7892 | k141_7892_24 | 24976 | 26082 | - | GH177 |
| TC | k141_7892 | k141_7892_25 | 26313 | 27698 | + | 2.A.47.5.2 |
Gene ID: k141_7892_20
Type: TC
Location: 19953 - 21362 (+)
Type: TC
Location: 19953 - 21362 (+)
Gene ID: k141_7892_21
Type: TC
Location: 21532 - 23178 (+)
Type: TC
Location: 21532 - 23178 (+)
Gene ID: k141_7892_22
Type: pfam
Location: 23245 - 23877 (+)
Type: pfam
Location: 23245 - 23877 (+)
Gene ID: k141_7892_23
Type:
Location: 24154 - 24834 (-)
Type:
Location: 24154 - 24834 (-)
Gene ID: k141_7892_24
Type: CAZyme
Location: 24976 - 26082 (-)
Type: CAZyme
Location: 24976 - 26082 (-)
Gene ID: k141_7892_25
Type: TC
Location: 26313 - 27698 (+)
Type: TC
Location: 26313 - 27698 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_7892_20 | vegetarian > vegan | 1.03081 | 0.04669 |
| k141_7892_21 | vegan > omnivore | 1.07752 | 0.00581 |
| k141_7892_22 | vegetarian > omnivore | 1.14389 | 0.00573 |