Cluster: CGMR037040_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR037040
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_51932 | k141_51932_64 | 71926 | 73830 | + | 2.A.37.1.2 |
| pfam | k141_51932 | k141_51932_65 | 73866 | 76001 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | k141_51932 | k141_51932_66 | 76120 | 77106 | - | 3.A.1.15.5 |
| TC | k141_51932 | k141_51932_67 | 77274 | 78035 | - | 3.A.16.1.3 |
| CAZyme | k141_51932 | k141_51932_68 | 78035 | 79162 | - | GH102 |
Gene ID: k141_51932_64
Type: TC
Location: 71926 - 73830 (+)
Type: TC
Location: 71926 - 73830 (+)
Gene ID: k141_51932_65
Type: pfam
Location: 73866 - 76001 (-)
Type: pfam
Location: 73866 - 76001 (-)
Gene ID: k141_51932_66
Type: TC
Location: 76120 - 77106 (-)
Type: TC
Location: 76120 - 77106 (-)
Gene ID: k141_51932_67
Type: TC
Location: 77274 - 78035 (-)
Type: TC
Location: 77274 - 78035 (-)
Gene ID: k141_51932_68
Type: CAZyme
Location: 78035 - 79162 (-)
Type: CAZyme
Location: 78035 - 79162 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_51932_65 | vegan > omnivore | 1.46686 | 0.00581 |
| k141_51932_65 | vegetarian > omnivore | 1.33497 | 0.00573 |
| k141_51932_66 | vegan > omnivore | 1.43371 | 0.00581 |
| k141_51932_67 | vegan > omnivore | 1.45312 | 0.00581 |
| k141_51932_67 | vegetarian > omnivore | 1.39655 | 0.00573 |