Cluster: CGMR036481_CGC4
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: CGMR036481
- CGC Family ID: CGCFAM_07839
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_205767 | k141_205767_1 | 58 | 2613 | + | GT4 | GT4 |
| CAZyme | k141_205767 | k141_205767_2 | 2665 | 3591 | - | GT2 |
| CAZyme | k141_205767 | k141_205767_3 | 3588 | 4964 | - | GT4 |
| TC | k141_205767 | k141_205767_4 | 4961 | 6166 | - | 3.A.1.103.5 |
| TC | k141_205767 | k141_205767_5 | 6166 | 6996 | - | 3.A.1.103.6 |
| pfam | k141_205767 | k141_205767_6 | 7255 | 8691 | + | dTDP_sugar_isom | Epimerase | RmlD_sub_bind |
| pfam | k141_205767 | k141_205767_7 | 8751 | 10472 | + | DUF2142 |
| CAZyme | k141_205767 | k141_205767_8 | 10465 | 11211 | + | GT2 |
| pfam | k141_205767 | k141_205767_9 | 11208 | 11603 | + | DUF2304 |
| CAZyme | k141_205767 | k141_205767_10 | 11614 | 12717 | - | GT4 |
| pfam | k141_205767 | k141_205767_11 | 12837 | 13676 | + | LicD |
| CAZyme | k141_205767 | k141_205767_12 | 13806 | 14813 | + | GT2 |
| CAZyme | k141_205767 | k141_205767_13 | 14873 | 15763 | + | GT2 |
| NULL(UNKNOWN) | k141_205767 | k141_205767_14 | 15776 | 17038 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_205767 | k141_205767_15 | 17056 | 18048 | - | LicD |
| TC | k141_205767 | k141_205767_16 | 18003 | 18956 | - | 2.A.7.18.1 |
Gene ID: k141_205767_1
Type: CAZyme
Location: 58 - 2613 (+)
Type: CAZyme
Location: 58 - 2613 (+)
Gene ID: k141_205767_2
Type: CAZyme
Location: 2665 - 3591 (-)
Type: CAZyme
Location: 2665 - 3591 (-)
Gene ID: k141_205767_3
Type: CAZyme
Location: 3588 - 4964 (-)
Type: CAZyme
Location: 3588 - 4964 (-)
Gene ID: k141_205767_4
Type: TC
Location: 4961 - 6166 (-)
Type: TC
Location: 4961 - 6166 (-)
Gene ID: k141_205767_5
Type: TC
Location: 6166 - 6996 (-)
Type: TC
Location: 6166 - 6996 (-)
Gene ID: k141_205767_6
Type: pfam
Location: 7255 - 8691 (+)
Type: pfam
Location: 7255 - 8691 (+)
Gene ID: k141_205767_7
Type: pfam
Location: 8751 - 10472 (+)
Type: pfam
Location: 8751 - 10472 (+)
Gene ID: k141_205767_8
Type: CAZyme
Location: 10465 - 11211 (+)
Type: CAZyme
Location: 10465 - 11211 (+)
Gene ID: k141_205767_9
Type: pfam
Location: 11208 - 11603 (+)
Type: pfam
Location: 11208 - 11603 (+)
Gene ID: k141_205767_10
Type: CAZyme
Location: 11614 - 12717 (-)
Type: CAZyme
Location: 11614 - 12717 (-)
Gene ID: k141_205767_11
Type: pfam
Location: 12837 - 13676 (+)
Type: pfam
Location: 12837 - 13676 (+)
Gene ID: k141_205767_12
Type: CAZyme
Location: 13806 - 14813 (+)
Type: CAZyme
Location: 13806 - 14813 (+)
Gene ID: k141_205767_13
Type: CAZyme
Location: 14873 - 15763 (+)
Type: CAZyme
Location: 14873 - 15763 (+)
Gene ID: k141_205767_14
Type:
Location: 15776 - 17038 (+)
Type:
Location: 15776 - 17038 (+)
Gene ID: k141_205767_15
Type: pfam
Location: 17056 - 18048 (-)
Type: pfam
Location: 17056 - 18048 (-)
Gene ID: k141_205767_16
Type: TC
Location: 18003 - 18956 (-)
Type: TC
Location: 18003 - 18956 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces radicidentis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.