Cluster: CGMR035943_CGC6
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR035943
- CGC Family ID: CGCFAM_03610
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_19577 | k141_19577_22 | 24110 | 24973 | - | 3.A.1.1.48 |
| TC | k141_19577 | k141_19577_23 | 24970 | 25959 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | k141_19577 | k141_19577_24 | 26078 | 27469 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_19577 | k141_19577_25 | 27576 | 28583 | - | LacI |
| CAZyme | k141_19577 | k141_19577_26 | 29110 | 31542 | + | GH94 |
| CAZyme | k141_19577 | k141_19577_27 | 31656 | 32981 | + | GH1 |
| NULL(UNKNOWN) | k141_19577 | k141_19577_28 | 33333 | 34328 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_19577 | k141_19577_29 | 34504 | 35352 | + | 3.A.1.3.14 |
| TC | k141_19577 | k141_19577_30 | 36542 | 37498 | - | 3.A.11.1.4 |
| NULL(UNKNOWN) | k141_19577 | k141_19577_31 | 37648 | 37899 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_19577 | k141_19577_32 | 37989 | 38666 | - | 3.A.1.122.2 |
| pfam | k141_19577 | k141_19577_33 | 38897 | 40405 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| TC | k141_19577 | k141_19577_34 | 40558 | 41037 | + | 9.A.11.1.1 |
| TC | k141_19577 | k141_19577_35 | 41051 | 42061 | + | 9.A.11.1.1 |
Gene ID: k141_19577_22
Type: TC
Location: 24110 - 24973 (-)
Type: TC
Location: 24110 - 24973 (-)
Gene ID: k141_19577_23
Type: TC
Location: 24970 - 25959 (-)
Type: TC
Location: 24970 - 25959 (-)
Gene ID: k141_19577_24
Type:
Location: 26078 - 27469 (-)
Type:
Location: 26078 - 27469 (-)
Gene ID: k141_19577_25
Type: TF
Location: 27576 - 28583 (-)
Type: TF
Location: 27576 - 28583 (-)
Gene ID: k141_19577_26
Type: CAZyme
Location: 29110 - 31542 (+)
Type: CAZyme
Location: 29110 - 31542 (+)
Gene ID: k141_19577_27
Type: CAZyme
Location: 31656 - 32981 (+)
Type: CAZyme
Location: 31656 - 32981 (+)
Gene ID: k141_19577_28
Type:
Location: 33333 - 34328 (+)
Type:
Location: 33333 - 34328 (+)
Gene ID: k141_19577_29
Type: TC
Location: 34504 - 35352 (+)
Type: TC
Location: 34504 - 35352 (+)
Gene ID: k141_19577_30
Type: TC
Location: 36542 - 37498 (-)
Type: TC
Location: 36542 - 37498 (-)
Gene ID: k141_19577_31
Type:
Location: 37648 - 37899 (-)
Type:
Location: 37648 - 37899 (-)
Gene ID: k141_19577_32
Type: TC
Location: 37989 - 38666 (-)
Type: TC
Location: 37989 - 38666 (-)
Gene ID: k141_19577_33
Type: pfam
Location: 38897 - 40405 (+)
Type: pfam
Location: 38897 - 40405 (+)
Gene ID: k141_19577_34
Type: TC
Location: 40558 - 41037 (+)
Type: TC
Location: 40558 - 41037 (+)
Gene ID: k141_19577_35
Type: TC
Location: 41051 - 42061 (+)
Type: TC
Location: 41051 - 42061 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Species
Clostridium_E jeddahense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.