Cluster: CGMR035712_CGC4
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR035712
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_478042 | k141_478042_5 | 3391 | 5613 | + | GH2 |
| pfam | k141_478042 | k141_478042_6 | 5617 | 6561 | + | ROK |
| STP | k141_478042 | k141_478042_7 | 6561 | 7172 | + | SIS |
| CAZyme | k141_478042 | k141_478042_8 | 7207 | 8085 | - | GH130_6 |
| CAZyme | k141_478042 | k141_478042_9 | 8087 | 9532 | - | GH142 |
| TF | k141_478042 | k141_478042_10 | 9654 | 10475 | + | HTH_AraC | HTH_AraC |
| peptidase | k141_478042 | k141_478042_11 | 10533 | 11672 | + | S12.UPW |
| CAZyme | k141_478042 | k141_478042_12 | 11683 | 13203 | + | GH32 |
| STP | k141_478042 | k141_478042_13 | 13215 | 14093 | + | NIR_SIR | NIR_SIR_ferr |
| STP | k141_478042 | k141_478042_14 | 14071 | 14994 | + | Peripla_BP_2 |
| TC | k141_478042 | k141_478042_15 | 14966 | 15952 | + | 3.A.1.14.21 |
| TC | k141_478042 | k141_478042_16 | 15945 | 16688 | + | 3.A.1.14.8 |
| CAZyme | k141_478042 | k141_478042_17 | 16752 | 17840 | + | GH33 |
| TF | k141_478042 | k141_478042_18 | 17867 | 18643 | - | HTH_AraC | HTH_AraC |
| CAZyme | k141_478042 | k141_478042_19 | 18764 | 20677 | + | GH33 |
Gene ID: k141_478042_5
Type: CAZyme
Location: 3391 - 5613 (+)
Type: CAZyme
Location: 3391 - 5613 (+)
Gene ID: k141_478042_6
Type: pfam
Location: 5617 - 6561 (+)
Type: pfam
Location: 5617 - 6561 (+)
Gene ID: k141_478042_7
Type: STP
Location: 6561 - 7172 (+)
Type: STP
Location: 6561 - 7172 (+)
Gene ID: k141_478042_8
Type: CAZyme
Location: 7207 - 8085 (-)
Type: CAZyme
Location: 7207 - 8085 (-)
Gene ID: k141_478042_9
Type: CAZyme
Location: 8087 - 9532 (-)
Type: CAZyme
Location: 8087 - 9532 (-)
Gene ID: k141_478042_10
Type: TF
Location: 9654 - 10475 (+)
Type: TF
Location: 9654 - 10475 (+)
Gene ID: k141_478042_11
Type: peptidase
Location: 10533 - 11672 (+)
Type: peptidase
Location: 10533 - 11672 (+)
Gene ID: k141_478042_12
Type: CAZyme
Location: 11683 - 13203 (+)
Type: CAZyme
Location: 11683 - 13203 (+)
Gene ID: k141_478042_13
Type: STP
Location: 13215 - 14093 (+)
Type: STP
Location: 13215 - 14093 (+)
Gene ID: k141_478042_14
Type: STP
Location: 14071 - 14994 (+)
Type: STP
Location: 14071 - 14994 (+)
Gene ID: k141_478042_15
Type: TC
Location: 14966 - 15952 (+)
Type: TC
Location: 14966 - 15952 (+)
Gene ID: k141_478042_16
Type: TC
Location: 15945 - 16688 (+)
Type: TC
Location: 15945 - 16688 (+)
Gene ID: k141_478042_17
Type: CAZyme
Location: 16752 - 17840 (+)
Type: CAZyme
Location: 16752 - 17840 (+)
Gene ID: k141_478042_18
Type: TF
Location: 17867 - 18643 (-)
Type: TF
Location: 17867 - 18643 (-)
Gene ID: k141_478042_19
Type: CAZyme
Location: 18764 - 20677 (+)
Type: CAZyme
Location: 18764 - 20677 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Fumia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.