Cluster: CGMR034812_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR034812
- CGC Family ID: CGCFAM_05520
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_137914 | k141_137914_27 | 26273 | 28660 | + | 3.A.3.23.2 |
| STP | k141_137914 | k141_137914_28 | 28707 | 29984 | + | HD |
| TC | k141_137914 | k141_137914_29 | 30038 | 30778 | - | 3.A.1.3.15 |
| TC | k141_137914 | k141_137914_30 | 30768 | 32294 | - | 3.A.1.3.20 |
| pfam | k141_137914 | k141_137914_31 | 32342 | 33514 | - | malic | Malic_M |
| CAZyme | k141_137914 | k141_137914_32 | 34205 | 36175 | + | GH13_28 |
Gene ID: k141_137914_27
Type: TC
Location: 26273 - 28660 (+)
Type: TC
Location: 26273 - 28660 (+)
Gene ID: k141_137914_28
Type: STP
Location: 28707 - 29984 (+)
Type: STP
Location: 28707 - 29984 (+)
Gene ID: k141_137914_29
Type: TC
Location: 30038 - 30778 (-)
Type: TC
Location: 30038 - 30778 (-)
Gene ID: k141_137914_30
Type: TC
Location: 30768 - 32294 (-)
Type: TC
Location: 30768 - 32294 (-)
Gene ID: k141_137914_31
Type: pfam
Location: 32342 - 33514 (-)
Type: pfam
Location: 32342 - 33514 (-)
Gene ID: k141_137914_32
Type: CAZyme
Location: 34205 - 36175 (+)
Type: CAZyme
Location: 34205 - 36175 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_137914_31 | vegan > omnivore | 1.69802 | 0.01882 |
| k141_137914_31 | vegetarian > omnivore | 1.36293 | 0.01882 |