Cluster: CGMR034523_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR034523
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_6956 | k141_6956_25 | 23149 | 24993 | - | 3.A.1.106.2 |
| TF | k141_6956 | k141_6956_26 | 25070 | 25960 | - | HTH_AraC | HTH_AraC |
| pfam | k141_6956 | k141_6956_27 | 26064 | 26408 | + | CMD |
| CAZyme | k141_6956 | k141_6956_28 | 26482 | 27537 | - | GT9 |
Gene ID: k141_6956_25
Type: TC
Location: 23149 - 24993 (-)
Type: TC
Location: 23149 - 24993 (-)
Gene ID: k141_6956_26
Type: TF
Location: 25070 - 25960 (-)
Type: TF
Location: 25070 - 25960 (-)
Gene ID: k141_6956_27
Type: pfam
Location: 26064 - 26408 (+)
Type: pfam
Location: 26064 - 26408 (+)
Gene ID: k141_6956_28
Type: CAZyme
Location: 26482 - 27537 (-)
Type: CAZyme
Location: 26482 - 27537 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900755445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_6956_25 | vegetarian > omnivore | 1.11054 | 0.00180 |
| k141_6956_25 | vegetarian > vegan | 1.86851 | 0.01386 |
| k141_6956_26 | vegetarian > vegan | 1.27913 | 0.01386 |
| k141_6956_27 | vegan > omnivore | 1.15685 | 0.00581 |
| k141_6956_27 | vegetarian > omnivore | 1.28187 | 0.00180 |
| k141_6956_28 | vegetarian > omnivore | 1.66825 | 0.00180 |
| k141_6956_28 | vegetarian > vegan | 1.53284 | 0.01386 |