Cluster: CGMR034523_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR034523
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_7577 | k141_7577_4 | 3078 | 3893 | + | GT2 |
| TC | k141_7577 | k141_7577_5 | 3890 | 5266 | + | 2.A.38.1.1 |
| TC | k141_7577 | k141_7577_6 | 5345 | 5728 | + | 1.A.22.1.1 |
Gene ID: k141_7577_4
Type: CAZyme
Location: 3078 - 3893 (+)
Type: CAZyme
Location: 3078 - 3893 (+)
Gene ID: k141_7577_5
Type: TC
Location: 3890 - 5266 (+)
Type: TC
Location: 3890 - 5266 (+)
Gene ID: k141_7577_6
Type: TC
Location: 5345 - 5728 (+)
Type: TC
Location: 5345 - 5728 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900755445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_7577_4 | vegan > omnivore | 1.70592 | 0.00581 |
| k141_7577_4 | vegetarian > omnivore | 1.04377 | 0.00180 |
| k141_7577_5 | vegetarian > omnivore | 1.40810 | 0.00180 |
| k141_7577_6 | vegan > omnivore | 1.65973 | 0.00581 |
| k141_7577_6 | vegetarian > omnivore | 3.53229 | 0.00180 |
| k141_7577_6 | vegetarian > vegan | 1.87256 | 0.01386 |