Cluster: CGMR034523_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR034523
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_7179 | k141_7179_6 | 4326 | 4631 | + | 9.B.21.2.1 |
| TC | k141_7179 | k141_7179_7 | 4631 | 6496 | + | 2.A.16.2.2 |
| pfam | k141_7179 | k141_7179_8 | 6539 | 8080 | - | PFL-like | YjjI-like |
| TC | k141_7179 | k141_7179_9 | 8271 | 8936 | + | 2.A.115.2.7 |
| CAZyme | k141_7179 | k141_7179_10 | 8886 | 9914 | - | GT9 |
Gene ID: k141_7179_6
Type: TC
Location: 4326 - 4631 (+)
Type: TC
Location: 4326 - 4631 (+)
Gene ID: k141_7179_7
Type: TC
Location: 4631 - 6496 (+)
Type: TC
Location: 4631 - 6496 (+)
Gene ID: k141_7179_8
Type: pfam
Location: 6539 - 8080 (-)
Type: pfam
Location: 6539 - 8080 (-)
Gene ID: k141_7179_9
Type: TC
Location: 8271 - 8936 (+)
Type: TC
Location: 8271 - 8936 (+)
Gene ID: k141_7179_10
Type: CAZyme
Location: 8886 - 9914 (-)
Type: CAZyme
Location: 8886 - 9914 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900755445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_7179_9 | vegan > omnivore | 1.26158 | 0.00581 |
| k141_7179_9 | vegetarian > omnivore | 1.58720 | 0.00180 |
| k141_7179_10 | vegan > omnivore | 1.32446 | 0.00581 |
| k141_7179_10 | vegetarian > omnivore | 1.07612 | 0.00180 |