Cluster: CGMR034523_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR034523
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_1931 | k141_1931_18 | 21884 | 23788 | + | 2.A.37.1.2 |
| pfam | k141_1931 | k141_1931_19 | 23824 | 25959 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | k141_1931 | k141_1931_20 | 26078 | 27100 | - | 3.A.1.15.5 |
| TC | k141_1931 | k141_1931_21 | 27269 | 28030 | - | 3.A.16.1.3 |
| CAZyme | k141_1931 | k141_1931_22 | 28030 | 29157 | - | GH102 |
Gene ID: k141_1931_18
Type: TC
Location: 21884 - 23788 (+)
Type: TC
Location: 21884 - 23788 (+)
Gene ID: k141_1931_19
Type: pfam
Location: 23824 - 25959 (-)
Type: pfam
Location: 23824 - 25959 (-)
Gene ID: k141_1931_20
Type: TC
Location: 26078 - 27100 (-)
Type: TC
Location: 26078 - 27100 (-)
Gene ID: k141_1931_21
Type: TC
Location: 27269 - 28030 (-)
Type: TC
Location: 27269 - 28030 (-)
Gene ID: k141_1931_22
Type: CAZyme
Location: 28030 - 29157 (-)
Type: CAZyme
Location: 28030 - 29157 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900755445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_1931_19 | vegan > omnivore | 1.30074 | 0.00581 |
| k141_1931_19 | vegetarian > omnivore | 1.31024 | 0.00180 |
| k141_1931_20 | vegan > omnivore | 1.47461 | 0.00581 |
| k141_1931_20 | vegetarian > omnivore | 1.02848 | 0.00180 |
| k141_1931_21 | vegan > omnivore | 1.25650 | 0.00581 |
| k141_1931_21 | vegetarian > omnivore | 1.39153 | 0.00180 |
| k141_1931_22 | vegetarian > omnivore | 1.03653 | 0.00180 |