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Cluster: CGMR033372_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_39606 k141_39606_66 86378 87358 - GT2
TC k141_39606 k141_39606_67 87582 88985 + 9.B.18.1.1
pfam k141_39606 k141_39606_68 89004 90140 + LytR_cpsA_psr
pfam k141_39606 k141_39606_69 90124 91431 + O_anti_polymase
CAZyme k141_39606 k141_39606_70 91449 92375 + GT2
pfam k141_39606 k141_39606_71 92471 93880 + LytR_cpsA_psr
NULL(UNKNOWN) k141_39606 k141_39606_72 93914 95656 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_39606 k141_39606_73 95734 96627 - CE4
Gene ID: k141_39606_66
Type: CAZyme
Location: 86378 - 87358 (-)
Gene ID: k141_39606_67
Type: TC
Location: 87582 - 88985 (+)
Gene ID: k141_39606_68
Type: pfam
Location: 89004 - 90140 (+)
Gene ID: k141_39606_69
Type: pfam
Location: 90124 - 91431 (+)
Gene ID: k141_39606_70
Type: CAZyme
Location: 91449 - 92375 (+)
Gene ID: k141_39606_71
Type: pfam
Location: 92471 - 93880 (+)
Gene ID: k141_39606_72
Type:
Location: 93914 - 95656 (+)
Gene ID: k141_39606_73
Type: CAZyme
Location: 95734 - 96627 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Dorea_A
→
Species
Dorea_A amylophila

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_39606_73 vegan > omnivore 1.39559 0.01822

🧭 Explore Read Mapping of CGC

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