Cluster: CGMR033372_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR033372
- CGC Family ID: CGCFAM_03625
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_53878 | k141_53878_11 | 11387 | 12925 | - | GH77 |
| TF | k141_53878 | k141_53878_12 | 13449 | 14468 | + | LacI |
| TC | k141_53878 | k141_53878_13 | 14566 | 15312 | - | 3.A.1.3.25 |
| TC | k141_53878 | k141_53878_14 | 15302 | 15991 | - | 3.A.1.3.20 |
| TC | k141_53878 | k141_53878_15 | 16014 | 16802 | - | 3.A.1.3.2 |
Gene ID: k141_53878_11
Type: CAZyme
Location: 11387 - 12925 (-)
Type: CAZyme
Location: 11387 - 12925 (-)
Gene ID: k141_53878_12
Type: TF
Location: 13449 - 14468 (+)
Type: TF
Location: 13449 - 14468 (+)
Gene ID: k141_53878_13
Type: TC
Location: 14566 - 15312 (-)
Type: TC
Location: 14566 - 15312 (-)
Gene ID: k141_53878_14
Type: TC
Location: 15302 - 15991 (-)
Type: TC
Location: 15302 - 15991 (-)
Gene ID: k141_53878_15
Type: TC
Location: 16014 - 16802 (-)
Type: TC
Location: 16014 - 16802 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea_A
Species
Dorea_A amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_53878_11 | vegan > omnivore | 1.13945 | 0.02538 |
| k141_53878_14 | vegetarian > vegan | 1.32676 | 0.03197 |