Cluster: CGMR033333_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR033333
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_172554 | k141_172554_17 | 15667 | 22080 | - | GH31_18 |
| TF | k141_172554 | k141_172554_18 | 22592 | 23032 | - | MarR |
| NULL(UNKNOWN) | k141_172554 | k141_172554_19 | 23137 | 23463 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_172554 | k141_172554_20 | 23659 | 24486 | - | 4.A.6.1.6 |
| TC | k141_172554 | k141_172554_21 | 24486 | 25343 | - | 4.A.6.1.1 |
| TC | k141_172554 | k141_172554_22 | 25416 | 25904 | - | 4.A.6.1.9 |
Gene ID: k141_172554_17
Type: CAZyme
Location: 15667 - 22080 (-)
Type: CAZyme
Location: 15667 - 22080 (-)
Gene ID: k141_172554_18
Type: TF
Location: 22592 - 23032 (-)
Type: TF
Location: 22592 - 23032 (-)
Gene ID: k141_172554_19
Type:
Location: 23137 - 23463 (-)
Type:
Location: 23137 - 23463 (-)
Gene ID: k141_172554_20
Type: TC
Location: 23659 - 24486 (-)
Type: TC
Location: 23659 - 24486 (-)
Gene ID: k141_172554_21
Type: TC
Location: 24486 - 25343 (-)
Type: TC
Location: 24486 - 25343 (-)
Gene ID: k141_172554_22
Type: TC
Location: 25416 - 25904 (-)
Type: TC
Location: 25416 - 25904 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900543945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_172554_17 | vegetarian > omnivore | 1.52546 | 0.04825 |
| k141_172554_17 | vegetarian > vegan | 2.13849 | 0.02628 |