Cluster: CGMR033333_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR033333
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_14795 | k141_14795_20 | 16785 | 17258 | + | 4.A.6.1.18 |
| TC | k141_14795 | k141_14795_21 | 17268 | 18053 | + | 4.A.6.1.13 |
| TC | k141_14795 | k141_14795_22 | 18056 | 18889 | + | 4.A.6.1.13 |
| pfam | k141_14795 | k141_14795_23 | 18916 | 19314 | + | EIIA-man |
| CAZyme | k141_14795 | k141_14795_24 | 19327 | 20451 | + | GH172 |
Gene ID: k141_14795_20
Type: TC
Location: 16785 - 17258 (+)
Type: TC
Location: 16785 - 17258 (+)
Gene ID: k141_14795_21
Type: TC
Location: 17268 - 18053 (+)
Type: TC
Location: 17268 - 18053 (+)
Gene ID: k141_14795_22
Type: TC
Location: 18056 - 18889 (+)
Type: TC
Location: 18056 - 18889 (+)
Gene ID: k141_14795_23
Type: pfam
Location: 18916 - 19314 (+)
Type: pfam
Location: 18916 - 19314 (+)
Gene ID: k141_14795_24
Type: CAZyme
Location: 19327 - 20451 (+)
Type: CAZyme
Location: 19327 - 20451 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900543945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_14795_20 | vegan > omnivore | 1.10062 | 0.00701 |
| k141_14795_24 | vegan > omnivore | 1.02480 | 0.00701 |