Cluster: CGMR032596_CGC44
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR032596
- CGC Family ID: CGCFAM_00695
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_189558 | k141_189558_13 | 14321 | 15733 | - | 2.A.1.3.26 |
| TC | k141_189558 | k141_189558_14 | 15730 | 18810 | - | 2.A.6.2.12 |
| TC | k141_189558 | k141_189558_15 | 18811 | 21933 | - | 2.A.6.2.12 |
| TC | k141_189558 | k141_189558_16 | 21933 | 23180 | - | 8.A.1.6.2 |
| pfam | k141_189558 | k141_189558_17 | 23619 | 24971 | - | HSP70 | HSP70 |
| STP | k141_189558 | k141_189558_18 | 25108 | 25977 | + | AlkA_N | HhH-GPD |
| TC | k141_189558 | k141_189558_19 | 25945 | 29325 | - | 9.B.34.1.1 |
| pfam | k141_189558 | k141_189558_20 | 29590 | 30231 | + | PRK |
| pfam | k141_189558 | k141_189558_21 | 30323 | 30904 | + | DCD_N | DCD |
| TC | k141_189558 | k141_189558_22 | 30931 | 32784 | + | 9.B.22.2.2 |
| TC | k141_189558 | k141_189558_23 | 32829 | 34430 | - | 2.A.109.2.3 |
| TC | k141_189558 | k141_189558_24 | 35068 | 36207 | + | 1.B.18.3.1 |
| pfam | k141_189558 | k141_189558_25 | 36213 | 36662 | + | LMWPc |
| TC | k141_189558 | k141_189558_26 | 36659 | 38821 | + | 8.A.3.3.2 |
| CAZyme | k141_189558 | k141_189558_27 | 38894 | 39736 | + | GT2 |
| pfam | k141_189558 | k141_189558_28 | 39739 | 40227 | + | Hexapep |
| CAZyme | k141_189558 | k141_189558_29 | 40224 | 41441 | + | GT4 |
| NULL(UNKNOWN) | k141_189558 | k141_189558_30 | 41416 | 42633 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_189558 | k141_189558_31 | 42639 | 43385 | + | GT2 |
Gene ID: k141_189558_13
Type: TC
Location: 14321 - 15733 (-)
Type: TC
Location: 14321 - 15733 (-)
Gene ID: k141_189558_14
Type: TC
Location: 15730 - 18810 (-)
Type: TC
Location: 15730 - 18810 (-)
Gene ID: k141_189558_15
Type: TC
Location: 18811 - 21933 (-)
Type: TC
Location: 18811 - 21933 (-)
Gene ID: k141_189558_16
Type: TC
Location: 21933 - 23180 (-)
Type: TC
Location: 21933 - 23180 (-)
Gene ID: k141_189558_17
Type: pfam
Location: 23619 - 24971 (-)
Type: pfam
Location: 23619 - 24971 (-)
Gene ID: k141_189558_18
Type: STP
Location: 25108 - 25977 (+)
Type: STP
Location: 25108 - 25977 (+)
Gene ID: k141_189558_19
Type: TC
Location: 25945 - 29325 (-)
Type: TC
Location: 25945 - 29325 (-)
Gene ID: k141_189558_20
Type: pfam
Location: 29590 - 30231 (+)
Type: pfam
Location: 29590 - 30231 (+)
Gene ID: k141_189558_21
Type: pfam
Location: 30323 - 30904 (+)
Type: pfam
Location: 30323 - 30904 (+)
Gene ID: k141_189558_22
Type: TC
Location: 30931 - 32784 (+)
Type: TC
Location: 30931 - 32784 (+)
Gene ID: k141_189558_23
Type: TC
Location: 32829 - 34430 (-)
Type: TC
Location: 32829 - 34430 (-)
Gene ID: k141_189558_24
Type: TC
Location: 35068 - 36207 (+)
Type: TC
Location: 35068 - 36207 (+)
Gene ID: k141_189558_25
Type: pfam
Location: 36213 - 36662 (+)
Type: pfam
Location: 36213 - 36662 (+)
Gene ID: k141_189558_26
Type: TC
Location: 36659 - 38821 (+)
Type: TC
Location: 36659 - 38821 (+)
Gene ID: k141_189558_27
Type: CAZyme
Location: 38894 - 39736 (+)
Type: CAZyme
Location: 38894 - 39736 (+)
Gene ID: k141_189558_28
Type: pfam
Location: 39739 - 40227 (+)
Type: pfam
Location: 39739 - 40227 (+)
Gene ID: k141_189558_29
Type: CAZyme
Location: 40224 - 41441 (+)
Type: CAZyme
Location: 40224 - 41441 (+)
Gene ID: k141_189558_30
Type:
Location: 41416 - 42633 (+)
Type:
Location: 41416 - 42633 (+)
Gene ID: k141_189558_31
Type: CAZyme
Location: 42639 - 43385 (+)
Type: CAZyme
Location: 42639 - 43385 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter portucalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.