Cluster: CGMR032596_CGC39
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR032596
- CGC Family ID: CGCFAM_00433
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_16013 | k141_16013_25 | 28841 | 30127 | - | 2.A.56.1.5 |
| pfam | k141_16013 | k141_16013_26 | 30158 | 30667 | - | DctQ |
| TC | k141_16013 | k141_16013_27 | 30730 | 31707 | - | 2.A.56.1.7 |
| TC | k141_16013 | k141_16013_28 | 32083 | 34791 | - | 3.A.3.4.1 |
| TF | k141_16013 | k141_16013_29 | 35181 | 36128 | + | LacI |
| TC | k141_16013 | k141_16013_30 | 36286 | 37692 | + | 4.A.1.2.4 |
| CAZyme | k141_16013 | k141_16013_31 | 37742 | 39394 | + | GH13_29 |
Gene ID: k141_16013_25
Type: TC
Location: 28841 - 30127 (-)
Type: TC
Location: 28841 - 30127 (-)
Gene ID: k141_16013_26
Type: pfam
Location: 30158 - 30667 (-)
Type: pfam
Location: 30158 - 30667 (-)
Gene ID: k141_16013_27
Type: TC
Location: 30730 - 31707 (-)
Type: TC
Location: 30730 - 31707 (-)
Gene ID: k141_16013_28
Type: TC
Location: 32083 - 34791 (-)
Type: TC
Location: 32083 - 34791 (-)
Gene ID: k141_16013_29
Type: TF
Location: 35181 - 36128 (+)
Type: TF
Location: 35181 - 36128 (+)
Gene ID: k141_16013_30
Type: TC
Location: 36286 - 37692 (+)
Type: TC
Location: 36286 - 37692 (+)
Gene ID: k141_16013_31
Type: CAZyme
Location: 37742 - 39394 (+)
Type: CAZyme
Location: 37742 - 39394 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter portucalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_16013_31 | vegetarian > omnivore | 1.16359 | 0.00685 |