Cluster: CGMR032596_CGC36
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR032596
- CGC Family ID: CGCFAM_03299
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_176352 | k141_176352_11 | 10510 | 11412 | + | 2.A.7.3.12 |
| TC | k141_176352 | k141_176352_12 | 11441 | 12259 | - | 3.A.1.24.1 |
| pfam | k141_176352 | k141_176352_13 | 12475 | 13218 | - | KDGP_aldolase |
| pfam | k141_176352 | k141_176352_14 | 13205 | 14314 | - | SelA |
| TC | k141_176352 | k141_176352_15 | 14318 | 15175 | - | 4.A.6.1.17 |
| TC | k141_176352 | k141_176352_16 | 15175 | 15924 | - | 4.A.6.1.17 |
| TC | k141_176352 | k141_176352_17 | 15950 | 16435 | - | 4.A.6.1.17 |
| TC | k141_176352 | k141_176352_18 | 16448 | 16873 | - | 4.A.6.1.17 |
| TC | k141_176352 | k141_176352_19 | 17087 | 19885 | - | 3.A.23.1.1 |
| pfam | k141_176352 | k141_176352_20 | 19976 | 20392 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| NULL(UNKNOWN) | k141_176352 | k141_176352_21 | 20523 | 20816 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_176352 | k141_176352_22 | 20910 | 22292 | + | GH1 |
| TC | k141_176352 | k141_176352_23 | 22349 | 23533 | - | 2.A.1.2.26 |
Gene ID: k141_176352_11
Type: TC
Location: 10510 - 11412 (+)
Type: TC
Location: 10510 - 11412 (+)
Gene ID: k141_176352_12
Type: TC
Location: 11441 - 12259 (-)
Type: TC
Location: 11441 - 12259 (-)
Gene ID: k141_176352_13
Type: pfam
Location: 12475 - 13218 (-)
Type: pfam
Location: 12475 - 13218 (-)
Gene ID: k141_176352_14
Type: pfam
Location: 13205 - 14314 (-)
Type: pfam
Location: 13205 - 14314 (-)
Gene ID: k141_176352_15
Type: TC
Location: 14318 - 15175 (-)
Type: TC
Location: 14318 - 15175 (-)
Gene ID: k141_176352_16
Type: TC
Location: 15175 - 15924 (-)
Type: TC
Location: 15175 - 15924 (-)
Gene ID: k141_176352_17
Type: TC
Location: 15950 - 16435 (-)
Type: TC
Location: 15950 - 16435 (-)
Gene ID: k141_176352_18
Type: TC
Location: 16448 - 16873 (-)
Type: TC
Location: 16448 - 16873 (-)
Gene ID: k141_176352_19
Type: TC
Location: 17087 - 19885 (-)
Type: TC
Location: 17087 - 19885 (-)
Gene ID: k141_176352_20
Type: pfam
Location: 19976 - 20392 (-)
Type: pfam
Location: 19976 - 20392 (-)
Gene ID: k141_176352_21
Type:
Location: 20523 - 20816 (+)
Type:
Location: 20523 - 20816 (+)
Gene ID: k141_176352_22
Type: CAZyme
Location: 20910 - 22292 (+)
Type: CAZyme
Location: 20910 - 22292 (+)
Gene ID: k141_176352_23
Type: TC
Location: 22349 - 23533 (-)
Type: TC
Location: 22349 - 23533 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter portucalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.