Cluster: CGMR032596_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR032596
- CGC Family ID: CGCFAM_00236
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_48227 | k141_48227_23 | 34187 | 35626 | + | 2.A.3.1.1 |
| TC | k141_48227 | k141_48227_24 | 35807 | 37048 | + | 2.A.1.10.4 |
| pfam | k141_48227 | k141_48227_25 | 37064 | 38092 | + | AP_endonuc_2 |
| CAZyme | k141_48227 | k141_48227_26 | 38089 | 39240 | + | GH179 |
| TF | k141_48227 | k141_48227_27 | 39318 | 40298 | + | LacI |
| TC | k141_48227 | k141_48227_28 | 40302 | 41546 | - | 1.A.23.4.5 |
Gene ID: k141_48227_23
Type: TC
Location: 34187 - 35626 (+)
Type: TC
Location: 34187 - 35626 (+)
Gene ID: k141_48227_24
Type: TC
Location: 35807 - 37048 (+)
Type: TC
Location: 35807 - 37048 (+)
Gene ID: k141_48227_25
Type: pfam
Location: 37064 - 38092 (+)
Type: pfam
Location: 37064 - 38092 (+)
Gene ID: k141_48227_26
Type: CAZyme
Location: 38089 - 39240 (+)
Type: CAZyme
Location: 38089 - 39240 (+)
Gene ID: k141_48227_27
Type: TF
Location: 39318 - 40298 (+)
Type: TF
Location: 39318 - 40298 (+)
Gene ID: k141_48227_28
Type: TC
Location: 40302 - 41546 (-)
Type: TC
Location: 40302 - 41546 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter portucalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.