Cluster: CGMR032596_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR032596
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_76306 | k141_76306_12 | 12255 | 13346 | - | 4.A.2.1.9 |
| TC | k141_76306 | k141_76306_13 | 13373 | 13693 | - | 4.A.2.1.9 |
| TC | k141_76306 | k141_76306_14 | 13713 | 14183 | - | 4.A.2.1.9 |
| TF | k141_76306 | k141_76306_15 | 14210 | 15763 | - | HTH_11 | Mga |
| CAZyme | k141_76306 | k141_76306_16 | 16220 | 18538 | - | GH31_3 |
| TC | k141_76306 | k141_76306_17 | 18549 | 19931 | - | 2.A.2.3.4 |
Gene ID: k141_76306_12
Type: TC
Location: 12255 - 13346 (-)
Type: TC
Location: 12255 - 13346 (-)
Gene ID: k141_76306_13
Type: TC
Location: 13373 - 13693 (-)
Type: TC
Location: 13373 - 13693 (-)
Gene ID: k141_76306_14
Type: TC
Location: 13713 - 14183 (-)
Type: TC
Location: 13713 - 14183 (-)
Gene ID: k141_76306_15
Type: TF
Location: 14210 - 15763 (-)
Type: TF
Location: 14210 - 15763 (-)
Gene ID: k141_76306_16
Type: CAZyme
Location: 16220 - 18538 (-)
Type: CAZyme
Location: 16220 - 18538 (-)
Gene ID: k141_76306_17
Type: TC
Location: 18549 - 19931 (-)
Type: TC
Location: 18549 - 19931 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter portucalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_76306_16 | vegetarian > omnivore | 1.05867 | 0.01380 |
| k141_76306_16 | vegetarian > vegan | 1.15358 | 0.02117 |