Cluster: CGMR032224_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR032224
- CGC Family ID: CGCFAM_00411
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_260299 | k141_260299_52 | 47298 | 49793 | - | 3.A.12.1.1 |
| pfam | k141_260299 | k141_260299_53 | 49815 | 50690 | - | BacA |
| peptidase | k141_260299 | k141_260299_54 | 50792 | 51532 | - | S14.UPW |
| CAZyme | k141_260299 | k141_260299_55 | 51698 | 53149 | - | GT5 |
| STP | k141_260299 | k141_260299_56 | 53174 | 54457 | - | Aminotran_1_2 |
| peptidase | k141_260299 | k141_260299_57 | 54529 | 55257 | - | M20.UNW |
| TC | k141_260299 | k141_260299_58 | 55291 | 56229 | - | 9.A.40.1.1 |
Gene ID: k141_260299_52
Type: TC
Location: 47298 - 49793 (-)
Type: TC
Location: 47298 - 49793 (-)
Gene ID: k141_260299_53
Type: pfam
Location: 49815 - 50690 (-)
Type: pfam
Location: 49815 - 50690 (-)
Gene ID: k141_260299_54
Type: peptidase
Location: 50792 - 51532 (-)
Type: peptidase
Location: 50792 - 51532 (-)
Gene ID: k141_260299_55
Type: CAZyme
Location: 51698 - 53149 (-)
Type: CAZyme
Location: 51698 - 53149 (-)
Gene ID: k141_260299_56
Type: STP
Location: 53174 - 54457 (-)
Type: STP
Location: 53174 - 54457 (-)
Gene ID: k141_260299_57
Type: peptidase
Location: 54529 - 55257 (-)
Type: peptidase
Location: 54529 - 55257 (-)
Gene ID: k141_260299_58
Type: TC
Location: 55291 - 56229 (-)
Type: TC
Location: 55291 - 56229 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_260299_55 | vegetarian > omnivore | 1.00676 | 0.00290 |
| k141_260299_55 | vegetarian > vegan | 1.19747 | 0.01057 |