Cluster: CGMR030909_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR030909
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_164464 | k141_164464_15 | 16400 | 17854 | - | GH1 |
| TC | k141_164464 | k141_164464_16 | 17856 | 19205 | - | 4.A.3.2.6 |
| TC | k141_164464 | k141_164464_17 | 19215 | 19508 | - | 4.A.3.2.6 |
| TC | k141_164464 | k141_164464_18 | 19555 | 19881 | - | 4.A.3.2.7 |
Gene ID: k141_164464_15
Type: CAZyme
Location: 16400 - 17854 (-)
Type: CAZyme
Location: 16400 - 17854 (-)
Gene ID: k141_164464_16
Type: TC
Location: 17856 - 19205 (-)
Type: TC
Location: 17856 - 19205 (-)
Gene ID: k141_164464_17
Type: TC
Location: 19215 - 19508 (-)
Type: TC
Location: 19215 - 19508 (-)
Gene ID: k141_164464_18
Type: TC
Location: 19555 - 19881 (-)
Type: TC
Location: 19555 - 19881 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958439425
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_164464_15 | vegetarian > vegan | 2.18291 | 0.03201 |
| k141_164464_16 | vegetarian > vegan | 1.90518 | 0.03383 |
| k141_164464_17 | vegetarian > vegan | 2.16473 | 0.03383 |
| k141_164464_18 | vegetarian > vegan | 1.43294 | 0.04036 |