Cluster: CGMR030268_CGC66
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR030268
- CGC Family ID: CGCFAM_02544
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_138672 | k141_138672_48 | 54762 | 56129 | - | GH177 |
| CAZyme | k141_138672 | k141_138672_49 | 56140 | 57720 | - | GH20 |
| pfam | k141_138672 | k141_138672_50 | 57748 | 59598 | - | SusD_RagB | SusD-like_3 |
| TC | k141_138672 | k141_138672_51 | 59626 | 62796 | - | 1.B.14.6.1 |
| pfam | k141_138672 | k141_138672_52 | 62827 | 63822 | - | GFO_IDH_MocA |
| pfam | k141_138672 | k141_138672_53 | 63834 | 64625 | - | Glucosamine_iso |
| TC | k141_138672 | k141_138672_54 | 64643 | 65959 | - | 2.A.1.7.9 |
| CAZyme | k141_138672 | k141_138672_55 | 65971 | 67311 | - | GH177 |
| CAZyme | k141_138672 | k141_138672_56 | 67405 | 68622 | - | CE9 |
| TF | k141_138672 | k141_138672_57 | 68745 | 69908 | - | HTH_AraC |
| pfam | k141_138672 | k141_138672_58 | 69921 | 71243 | - | OEP | OEP |
| TC | k141_138672 | k141_138672_59 | 71258 | 74287 | - | 2.A.6.2.33 |
| TC | k141_138672 | k141_138672_60 | 74296 | 75393 | - | 2.A.6.2.28 |
Gene ID: k141_138672_48
Type: CAZyme
Location: 54762 - 56129 (-)
Type: CAZyme
Location: 54762 - 56129 (-)
Gene ID: k141_138672_49
Type: CAZyme
Location: 56140 - 57720 (-)
Type: CAZyme
Location: 56140 - 57720 (-)
Gene ID: k141_138672_50
Type: pfam
Location: 57748 - 59598 (-)
Type: pfam
Location: 57748 - 59598 (-)
Gene ID: k141_138672_51
Type: TC
Location: 59626 - 62796 (-)
Type: TC
Location: 59626 - 62796 (-)
Gene ID: k141_138672_52
Type: pfam
Location: 62827 - 63822 (-)
Type: pfam
Location: 62827 - 63822 (-)
Gene ID: k141_138672_53
Type: pfam
Location: 63834 - 64625 (-)
Type: pfam
Location: 63834 - 64625 (-)
Gene ID: k141_138672_54
Type: TC
Location: 64643 - 65959 (-)
Type: TC
Location: 64643 - 65959 (-)
Gene ID: k141_138672_55
Type: CAZyme
Location: 65971 - 67311 (-)
Type: CAZyme
Location: 65971 - 67311 (-)
Gene ID: k141_138672_56
Type: CAZyme
Location: 67405 - 68622 (-)
Type: CAZyme
Location: 67405 - 68622 (-)
Gene ID: k141_138672_57
Type: TF
Location: 68745 - 69908 (-)
Type: TF
Location: 68745 - 69908 (-)
Gene ID: k141_138672_58
Type: pfam
Location: 69921 - 71243 (-)
Type: pfam
Location: 69921 - 71243 (-)
Gene ID: k141_138672_59
Type: TC
Location: 71258 - 74287 (-)
Type: TC
Location: 71258 - 74287 (-)
Gene ID: k141_138672_60
Type: TC
Location: 74296 - 75393 (-)
Type: TC
Location: 74296 - 75393 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides chongii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_138672_48 | vegetarian > omnivore | 2.31332 | 0.01030 |
| k141_138672_48 | vegetarian > vegan | 1.87795 | 0.03644 |
| k141_138672_49 | vegetarian > omnivore | 2.41685 | 0.01030 |
| k141_138672_49 | vegetarian > vegan | 1.70701 | 0.03644 |
| k141_138672_50 | vegetarian > vegan | 1.11294 | 0.03644 |
| k141_138672_50 | vegetarian > omnivore | 2.11612 | 0.01030 |
| k141_138672_55 | vegetarian > omnivore | 1.43855 | 0.01030 |