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Cluster: CGMR029599_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_62621 k141_62621_21 17851 19323 - GH1
STP k141_62621 k141_62621_22 19329 20528 - Aminotran_1_2
TC k141_62621 k141_62621_23 20585 20923 - 4.A.3.2.8
TC k141_62621 k141_62621_24 20950 22566 - 4.A.3.2.2
pfam k141_62621 k141_62621_25 22593 22970 - Ribonuc_L-PSP
pfam k141_62621 k141_62621_26 23202 23876 + PAS_6 | HTH_22
TC k141_62621 k141_62621_27 23952 24626 - 3.A.1.125.2
pfam k141_62621 k141_62621_28 24628 25938 - FtsX | MacB_PCD
TC k141_62621 k141_62621_29 26083 28413 + 9.A.8.1.6
NULL(UNKNOWN) k141_62621 k141_62621_30 28442 29191 - NULL(UNKNOWN)
[View Structural Homologs]
TF k141_62621 k141_62621_31 29169 30158 - HTH_11
CAZyme k141_62621 k141_62621_32 30459 32426 - GT5
Gene ID: k141_62621_21
Type: CAZyme
Location: 17851 - 19323 (-)
Gene ID: k141_62621_22
Type: STP
Location: 19329 - 20528 (-)
Gene ID: k141_62621_23
Type: TC
Location: 20585 - 20923 (-)
Gene ID: k141_62621_24
Type: TC
Location: 20950 - 22566 (-)
Gene ID: k141_62621_25
Type: pfam
Location: 22593 - 22970 (-)
Gene ID: k141_62621_26
Type: pfam
Location: 23202 - 23876 (+)
Gene ID: k141_62621_27
Type: TC
Location: 23952 - 24626 (-)
Gene ID: k141_62621_28
Type: pfam
Location: 24628 - 25938 (-)
Gene ID: k141_62621_29
Type: TC
Location: 26083 - 28413 (+)
Gene ID: k141_62621_30
Type:
Location: 28442 - 29191 (-)
Gene ID: k141_62621_31
Type: TF
Location: 29169 - 30158 (-)
Gene ID: k141_62621_32
Type: CAZyme
Location: 30459 - 32426 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_62621_27 vegan > omnivore 1.33253 0.00358

🧭 Explore Read Mapping of CGC

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