Cluster: CGMR029240_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR029240
- CGC Family ID: CGCFAM_00615
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_180609 | k141_180609_1 | 2 | 928 | + | 3.A.1.5.37 |
| TC | k141_180609 | k141_180609_2 | 928 | 1956 | + | 3.A.1.5.36 |
| STP | k141_180609 | k141_180609_3 | 2699 | 5044 | + | GAF | SpoIIE |
| STP | k141_180609 | k141_180609_4 | 5123 | 5869 | + | STAS |
| CAZyme | k141_180609 | k141_180609_5 | 6613 | 8346 | + | GH13_30 |
Gene ID: k141_180609_1
Type: TC
Location: 2 - 928 (+)
Type: TC
Location: 2 - 928 (+)
Gene ID: k141_180609_2
Type: TC
Location: 928 - 1956 (+)
Type: TC
Location: 928 - 1956 (+)
Gene ID: k141_180609_3
Type: STP
Location: 2699 - 5044 (+)
Type: STP
Location: 2699 - 5044 (+)
Gene ID: k141_180609_4
Type: STP
Location: 5123 - 5869 (+)
Type: STP
Location: 5123 - 5869 (+)
Gene ID: k141_180609_5
Type: CAZyme
Location: 6613 - 8346 (+)
Type: CAZyme
Location: 6613 - 8346 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.