Cluster: CGMR028643_CGC2
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR028643
- CGC Family ID: CGCFAM_00568
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_73958 | k141_73958_84 | 107853 | 108692 | - | GT2 |
| CAZyme | k141_73958 | k141_73958_85 | 108689 | 109747 | - | GT4 |
| CAZyme | k141_73958 | k141_73958_86 | 109744 | 110805 | - | GT9 |
| TC | k141_73958 | k141_73958_87 | 110805 | 112532 | - | 3.A.1.106.1 |
| CAZyme | k141_73958 | k141_73958_88 | 112795 | 113562 | + | GT2 |
| pfam | k141_73958 | k141_73958_89 | 113568 | 117029 | - | tRNA_anti-codon | PHP | DNA_pol3_alpha | HHH_6 | DNA_pol3_finger |
| TC | k141_73958 | k141_73958_90 | 117091 | 118500 | - | 1.I.1.1.3 |
| NULL(UNKNOWN) | k141_73958 | k141_73958_91 | 118686 | 118865 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_73958 | k141_73958_92 | 118869 | 119807 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_73958 | k141_73958_93 | 120020 | 121408 | + | 9.B.145.1.2 |
| STP | k141_73958 | k141_73958_94 | 121819 | 123048 | + | FmdA_AmdA |
| pfam | k141_73958 | k141_73958_95 | 123122 | 123457 | + | Zn_ribbon_8 |
| TC | k141_73958 | k141_73958_96 | 123528 | 124007 | + | 1.A.29.1.5 |
| NULL(UNKNOWN) | k141_73958 | k141_73958_97 | 124090 | 124626 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_73958 | k141_73958_98 | 124687 | 124890 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_73958 | k141_73958_99 | 124960 | 126042 | + | 1.A.23.4.3 |
Gene ID: k141_73958_84
Type: CAZyme
Location: 107853 - 108692 (-)
Type: CAZyme
Location: 107853 - 108692 (-)
Gene ID: k141_73958_85
Type: CAZyme
Location: 108689 - 109747 (-)
Type: CAZyme
Location: 108689 - 109747 (-)
Gene ID: k141_73958_86
Type: CAZyme
Location: 109744 - 110805 (-)
Type: CAZyme
Location: 109744 - 110805 (-)
Gene ID: k141_73958_87
Type: TC
Location: 110805 - 112532 (-)
Type: TC
Location: 110805 - 112532 (-)
Gene ID: k141_73958_88
Type: CAZyme
Location: 112795 - 113562 (+)
Type: CAZyme
Location: 112795 - 113562 (+)
Gene ID: k141_73958_89
Type: pfam
Location: 113568 - 117029 (-)
Type: pfam
Location: 113568 - 117029 (-)
Gene ID: k141_73958_90
Type: TC
Location: 117091 - 118500 (-)
Type: TC
Location: 117091 - 118500 (-)
Gene ID: k141_73958_91
Type:
Location: 118686 - 118865 (-)
Type:
Location: 118686 - 118865 (-)
Gene ID: k141_73958_92
Type:
Location: 118869 - 119807 (+)
Type:
Location: 118869 - 119807 (+)
Gene ID: k141_73958_93
Type: TC
Location: 120020 - 121408 (+)
Type: TC
Location: 120020 - 121408 (+)
Gene ID: k141_73958_94
Type: STP
Location: 121819 - 123048 (+)
Type: STP
Location: 121819 - 123048 (+)
Gene ID: k141_73958_95
Type: pfam
Location: 123122 - 123457 (+)
Type: pfam
Location: 123122 - 123457 (+)
Gene ID: k141_73958_96
Type: TC
Location: 123528 - 124007 (+)
Type: TC
Location: 123528 - 124007 (+)
Gene ID: k141_73958_97
Type:
Location: 124090 - 124626 (-)
Type:
Location: 124090 - 124626 (-)
Gene ID: k141_73958_98
Type:
Location: 124687 - 124890 (-)
Type:
Location: 124687 - 124890 (-)
Gene ID: k141_73958_99
Type: TC
Location: 124960 - 126042 (+)
Type: TC
Location: 124960 - 126042 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.