Cluster: CGMR028231_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR028231
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_462645 | k141_462645_2 | 1999 | 3012 | + | 3.A.1.24.1 |
| TC | k141_462645 | k141_462645_3 | 3009 | 3665 | + | 3.A.1.24.5 |
| TC | k141_462645 | k141_462645_4 | 3741 | 4541 | + | 3.A.1.24.5 |
| NULL(UNKNOWN) | k141_462645 | k141_462645_5 | 4738 | 5418 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_462645 | k141_462645_6 | 5615 | 5977 | + | GntR |
| TC | k141_462645 | k141_462645_7 | 5979 | 6680 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | k141_462645 | k141_462645_8 | 6870 | 7667 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_462645 | k141_462645_9 | 7825 | 8661 | - | Thy1 |
| CAZyme | k141_462645 | k141_462645_10 | 8909 | 11356 | - | GT35 |
| CAZyme | k141_462645 | k141_462645_11 | 11564 | 13708 | - | GH13_11 |
| pfam | k141_462645 | k141_462645_12 | 13923 | 15425 | + | Pallilysin |
| TC | k141_462645 | k141_462645_13 | 15564 | 17432 | + | 4.C.1.1.4 |
Gene ID: k141_462645_2
Type: TC
Location: 1999 - 3012 (+)
Type: TC
Location: 1999 - 3012 (+)
Gene ID: k141_462645_3
Type: TC
Location: 3009 - 3665 (+)
Type: TC
Location: 3009 - 3665 (+)
Gene ID: k141_462645_4
Type: TC
Location: 3741 - 4541 (+)
Type: TC
Location: 3741 - 4541 (+)
Gene ID: k141_462645_5
Type:
Location: 4738 - 5418 (+)
Type:
Location: 4738 - 5418 (+)
Gene ID: k141_462645_6
Type: TF
Location: 5615 - 5977 (+)
Type: TF
Location: 5615 - 5977 (+)
Gene ID: k141_462645_7
Type: TC
Location: 5979 - 6680 (+)
Type: TC
Location: 5979 - 6680 (+)
Gene ID: k141_462645_8
Type:
Location: 6870 - 7667 (+)
Type:
Location: 6870 - 7667 (+)
Gene ID: k141_462645_9
Type: pfam
Location: 7825 - 8661 (-)
Type: pfam
Location: 7825 - 8661 (-)
Gene ID: k141_462645_10
Type: CAZyme
Location: 8909 - 11356 (-)
Type: CAZyme
Location: 8909 - 11356 (-)
Gene ID: k141_462645_11
Type: CAZyme
Location: 11564 - 13708 (-)
Type: CAZyme
Location: 11564 - 13708 (-)
Gene ID: k141_462645_12
Type: pfam
Location: 13923 - 15425 (+)
Type: pfam
Location: 13923 - 15425 (+)
Gene ID: k141_462645_13
Type: TC
Location: 15564 - 17432 (+)
Type: TC
Location: 15564 - 17432 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
RGIG1711
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.