Cluster: CGMR026893_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR026893
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_45113 | k141_45113_131 | 138165 | 138932 | - | 3.A.1.103.1 |
| TC | k141_45113 | k141_45113_132 | 138944 | 139789 | - | 3.A.1.103.6 |
| CAZyme | k141_45113 | k141_45113_133 | 139937 | 140890 | + | GT2 |
| pfam | k141_45113 | k141_45113_134 | 140897 | 141982 | + | Acyl_transf_3 |
| CAZyme | k141_45113 | k141_45113_135 | 142115 | 143293 | - | GT2 |
| CAZyme | k141_45113 | k141_45113_136 | 143295 | 144410 | - | GT2 |
| pfam | k141_45113 | k141_45113_137 | 144636 | 145673 | + | Acyl_transf_3 |
| pfam | k141_45113 | k141_45113_138 | 145707 | 147749 | - | DUF6541 |
| CAZyme | k141_45113 | k141_45113_139 | 148297 | 148989 | - | GT2 |
| pfam | k141_45113 | k141_45113_140 | 149284 | 150318 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | k141_45113 | k141_45113_141 | 150328 | 151365 | - | GT4 |
| pfam | k141_45113 | k141_45113_142 | 151481 | 152338 | - | LicD |
| CAZyme | k141_45113 | k141_45113_143 | 152617 | 153630 | + | GT2 |
Gene ID: k141_45113_131
Type: TC
Location: 138165 - 138932 (-)
Type: TC
Location: 138165 - 138932 (-)
Gene ID: k141_45113_132
Type: TC
Location: 138944 - 139789 (-)
Type: TC
Location: 138944 - 139789 (-)
Gene ID: k141_45113_133
Type: CAZyme
Location: 139937 - 140890 (+)
Type: CAZyme
Location: 139937 - 140890 (+)
Gene ID: k141_45113_134
Type: pfam
Location: 140897 - 141982 (+)
Type: pfam
Location: 140897 - 141982 (+)
Gene ID: k141_45113_135
Type: CAZyme
Location: 142115 - 143293 (-)
Type: CAZyme
Location: 142115 - 143293 (-)
Gene ID: k141_45113_136
Type: CAZyme
Location: 143295 - 144410 (-)
Type: CAZyme
Location: 143295 - 144410 (-)
Gene ID: k141_45113_137
Type: pfam
Location: 144636 - 145673 (+)
Type: pfam
Location: 144636 - 145673 (+)
Gene ID: k141_45113_138
Type: pfam
Location: 145707 - 147749 (-)
Type: pfam
Location: 145707 - 147749 (-)
Gene ID: k141_45113_139
Type: CAZyme
Location: 148297 - 148989 (-)
Type: CAZyme
Location: 148297 - 148989 (-)
Gene ID: k141_45113_140
Type: pfam
Location: 149284 - 150318 (-)
Type: pfam
Location: 149284 - 150318 (-)
Gene ID: k141_45113_141
Type: CAZyme
Location: 150328 - 151365 (-)
Type: CAZyme
Location: 150328 - 151365 (-)
Gene ID: k141_45113_142
Type: pfam
Location: 151481 - 152338 (-)
Type: pfam
Location: 151481 - 152338 (-)
Gene ID: k141_45113_143
Type: CAZyme
Location: 152617 - 153630 (+)
Type: CAZyme
Location: 152617 - 153630 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958348475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.