Cluster: CGMR025404_CGC50
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 10
- Substrate: pectin
- Genome ID: CGMR025404
- CGC Family ID: CGCFAM_00298
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_52566 | k141_52566_2 | 2325 | 3701 | - | PL1_2 |
| CAZyme | k141_52566 | k141_52566_3 | 3731 | 6592 | - | GH2 |
| sulfatase | k141_52566 | k141_52566_4 | 6748 | 8745 | - | S1_27 |
| TC | k141_52566 | k141_52566_5 | 8758 | 12000 | - | 1.B.14.6.1 |
| CAZyme | k141_52566 | k141_52566_6 | 12251 | 13483 | - | GH43 |
| CAZyme | k141_52566 | k141_52566_7 | 13507 | 16809 | - | GH106 |
| TC | k141_52566 | k141_52566_8 | 16982 | 19126 | - | 8.A.46.1.3 |
| TC | k141_52566 | k141_52566_9 | 19140 | 22379 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | k141_52566 | k141_52566_10 | 22630 | 22827 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_52566 | k141_52566_11 | 22869 | 23792 | - | HTH_AraC |
| CAZyme | k141_52566 | k141_52566_12 | 23954 | 25255 | - | GH105 |
| pfam | k141_52566 | k141_52566_13 | 25312 | 26121 | - | Aldolase_II |
| TC | k141_52566 | k141_52566_14 | 26185 | 27216 | - | 2.A.7.6.1 |
| pfam | k141_52566 | k141_52566_15 | 27285 | 28538 | - | RhaA |
| pfam | k141_52566 | k141_52566_16 | 28565 | 30034 | - | FGGY_N | FGGY_C |
| CAZyme | k141_52566 | k141_52566_17 | 30151 | 33306 | - | GH106 |
| CAZyme | k141_52566 | k141_52566_18 | 33363 | 34883 | - | GH28 |
| CAZyme | k141_52566 | k141_52566_19 | 35144 | 37033 | - | PL11 |
| CAZyme | k141_52566 | k141_52566_20 | 37039 | 39840 | - | GH106 |
| CAZyme | k141_52566 | k141_52566_21 | 39926 | 42451 | - | CE20 | GH105 |
Gene ID: k141_52566_2
Type: CAZyme
Location: 2325 - 3701 (-)
Type: CAZyme
Location: 2325 - 3701 (-)
Gene ID: k141_52566_3
Type: CAZyme
Location: 3731 - 6592 (-)
Type: CAZyme
Location: 3731 - 6592 (-)
Gene ID: k141_52566_4
Type: sulfatase
Location: 6748 - 8745 (-)
Type: sulfatase
Location: 6748 - 8745 (-)
Gene ID: k141_52566_5
Type: TC
Location: 8758 - 12000 (-)
Type: TC
Location: 8758 - 12000 (-)
Gene ID: k141_52566_6
Type: CAZyme
Location: 12251 - 13483 (-)
Type: CAZyme
Location: 12251 - 13483 (-)
Gene ID: k141_52566_7
Type: CAZyme
Location: 13507 - 16809 (-)
Type: CAZyme
Location: 13507 - 16809 (-)
Gene ID: k141_52566_8
Type: TC
Location: 16982 - 19126 (-)
Type: TC
Location: 16982 - 19126 (-)
Gene ID: k141_52566_9
Type: TC
Location: 19140 - 22379 (-)
Type: TC
Location: 19140 - 22379 (-)
Gene ID: k141_52566_10
Type:
Location: 22630 - 22827 (-)
Type:
Location: 22630 - 22827 (-)
Gene ID: k141_52566_11
Type: TF
Location: 22869 - 23792 (-)
Type: TF
Location: 22869 - 23792 (-)
Gene ID: k141_52566_12
Type: CAZyme
Location: 23954 - 25255 (-)
Type: CAZyme
Location: 23954 - 25255 (-)
Gene ID: k141_52566_13
Type: pfam
Location: 25312 - 26121 (-)
Type: pfam
Location: 25312 - 26121 (-)
Gene ID: k141_52566_14
Type: TC
Location: 26185 - 27216 (-)
Type: TC
Location: 26185 - 27216 (-)
Gene ID: k141_52566_15
Type: pfam
Location: 27285 - 28538 (-)
Type: pfam
Location: 27285 - 28538 (-)
Gene ID: k141_52566_16
Type: pfam
Location: 28565 - 30034 (-)
Type: pfam
Location: 28565 - 30034 (-)
Gene ID: k141_52566_17
Type: CAZyme
Location: 30151 - 33306 (-)
Type: CAZyme
Location: 30151 - 33306 (-)
Gene ID: k141_52566_18
Type: CAZyme
Location: 33363 - 34883 (-)
Type: CAZyme
Location: 33363 - 34883 (-)
Gene ID: k141_52566_19
Type: CAZyme
Location: 35144 - 37033 (-)
Type: CAZyme
Location: 35144 - 37033 (-)
Gene ID: k141_52566_20
Type: CAZyme
Location: 37039 - 39840 (-)
Type: CAZyme
Location: 37039 - 39840 (-)
Gene ID: k141_52566_21
Type: CAZyme
Location: 39926 - 42451 (-)
Type: CAZyme
Location: 39926 - 42451 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fluxus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_52566_12 | vegan > omnivore | 1.14196 | 0.04571 |