Cluster: CGMR025404_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: pectin
- Genome ID: CGMR025404
- CGC Family ID: CGCFAM_00079
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_163837 | k141_163837_7 | 9069 | 10406 | - | GH144 |
| pfam | k141_163837 | k141_163837_8 | 10415 | 11275 | - | Exo_endo_phos |
| CAZyme | k141_163837 | k141_163837_9 | 11299 | 13620 | - | GH3 |
| TC | k141_163837 | k141_163837_10 | 13731 | 15197 | - | 8.A.46.1.3 |
| TC | k141_163837 | k141_163837_11 | 15226 | 18291 | - | 1.B.14.6.1 |
| TC | k141_163837 | k141_163837_12 | 18845 | 20368 | - | 8.A.46.1.3 |
| TC | k141_163837 | k141_163837_13 | 20419 | 23457 | - | 1.B.14.6.1 |
Gene ID: k141_163837_7
Type: CAZyme
Location: 9069 - 10406 (-)
Type: CAZyme
Location: 9069 - 10406 (-)
Gene ID: k141_163837_8
Type: pfam
Location: 10415 - 11275 (-)
Type: pfam
Location: 10415 - 11275 (-)
Gene ID: k141_163837_9
Type: CAZyme
Location: 11299 - 13620 (-)
Type: CAZyme
Location: 11299 - 13620 (-)
Gene ID: k141_163837_10
Type: TC
Location: 13731 - 15197 (-)
Type: TC
Location: 13731 - 15197 (-)
Gene ID: k141_163837_11
Type: TC
Location: 15226 - 18291 (-)
Type: TC
Location: 15226 - 18291 (-)
Gene ID: k141_163837_12
Type: TC
Location: 18845 - 20368 (-)
Type: TC
Location: 18845 - 20368 (-)
Gene ID: k141_163837_13
Type: TC
Location: 20419 - 23457 (-)
Type: TC
Location: 20419 - 23457 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fluxus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_163837_11 | vegan > omnivore | 1.09291 | 0.04571 |