Cluster: CGMR025312_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR025312
- CGC Family ID: CGCFAM_00002
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_41408 | k141_41408_50 | 58256 | 58999 | + | 9.B.18.1.2 |
| CAZyme | k141_41408 | k141_41408_51 | 59000 | 59833 | + | GT2 |
| NULL(UNKNOWN) | k141_41408 | k141_41408_52 | 59842 | 60057 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_41408 | k141_41408_53 | 60029 | 61063 | + | GT2 |
| CAZyme | k141_41408 | k141_41408_54 | 61088 | 62104 | + | GT2 |
| pfam | k141_41408 | k141_41408_55 | 62101 | 63369 | + | EpsG |
| CAZyme | k141_41408 | k141_41408_56 | 63381 | 64445 | + | GT2 |
Gene ID: k141_41408_50
Type: TC
Location: 58256 - 58999 (+)
Type: TC
Location: 58256 - 58999 (+)
Gene ID: k141_41408_51
Type: CAZyme
Location: 59000 - 59833 (+)
Type: CAZyme
Location: 59000 - 59833 (+)
Gene ID: k141_41408_52
Type:
Location: 59842 - 60057 (+)
Type:
Location: 59842 - 60057 (+)
Gene ID: k141_41408_53
Type: CAZyme
Location: 60029 - 61063 (+)
Type: CAZyme
Location: 60029 - 61063 (+)
Gene ID: k141_41408_54
Type: CAZyme
Location: 61088 - 62104 (+)
Type: CAZyme
Location: 61088 - 62104 (+)
Gene ID: k141_41408_55
Type: pfam
Location: 62101 - 63369 (+)
Type: pfam
Location: 62101 - 63369 (+)
Gene ID: k141_41408_56
Type: CAZyme
Location: 63381 - 64445 (+)
Type: CAZyme
Location: 63381 - 64445 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_41408_50 | vegan > omnivore | 1.09428 | 0.02280 |