Cluster: CGMR024118_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: CGMR024118
- CGC Family ID: CGCFAM_00649
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_21925 | k141_21925_9 | 17053 | 18903 | + | PL35 |
| CAZyme | k141_21925 | k141_21925_10 | 18936 | 22211 | + | PL8_3 |
| CAZyme | k141_21925 | k141_21925_11 | 22228 | 24087 | + | PL35 |
| CAZyme | k141_21925 | k141_21925_12 | 24090 | 25289 | + | GH88 |
| TF | k141_21925 | k141_21925_13 | 25487 | 26035 | + | GerE |
| STP | k141_21925 | k141_21925_14 | 26112 | 27050 | + | FecR |
| TC | k141_21925 | k141_21925_15 | 27252 | 30767 | + | 1.B.14.6.1 |
| pfam | k141_21925 | k141_21925_16 | 30794 | 32503 | + | SusD_RagB | SusD-like_3 |
| pfam | k141_21925 | k141_21925_17 | 32522 | 33736 | + | Glyco_tran_WbsX |
| CAZyme | k141_21925 | k141_21925_18 | 34629 | 36227 | + | GH20 |
Gene ID: k141_21925_9
Type: CAZyme
Location: 17053 - 18903 (+)
Type: CAZyme
Location: 17053 - 18903 (+)
Gene ID: k141_21925_10
Type: CAZyme
Location: 18936 - 22211 (+)
Type: CAZyme
Location: 18936 - 22211 (+)
Gene ID: k141_21925_11
Type: CAZyme
Location: 22228 - 24087 (+)
Type: CAZyme
Location: 22228 - 24087 (+)
Gene ID: k141_21925_12
Type: CAZyme
Location: 24090 - 25289 (+)
Type: CAZyme
Location: 24090 - 25289 (+)
Gene ID: k141_21925_13
Type: TF
Location: 25487 - 26035 (+)
Type: TF
Location: 25487 - 26035 (+)
Gene ID: k141_21925_14
Type: STP
Location: 26112 - 27050 (+)
Type: STP
Location: 26112 - 27050 (+)
Gene ID: k141_21925_15
Type: TC
Location: 27252 - 30767 (+)
Type: TC
Location: 27252 - 30767 (+)
Gene ID: k141_21925_16
Type: pfam
Location: 30794 - 32503 (+)
Type: pfam
Location: 30794 - 32503 (+)
Gene ID: k141_21925_17
Type: pfam
Location: 32522 - 33736 (+)
Type: pfam
Location: 32522 - 33736 (+)
Gene ID: k141_21925_18
Type: CAZyme
Location: 34629 - 36227 (+)
Type: CAZyme
Location: 34629 - 36227 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_21925_14 | vegetarian > omnivore | 2.09402 | 0.00050 |
| k141_21925_14 | vegetarian > vegan | 1.09923 | 0.01277 |
| k141_21925_15 | vegetarian > omnivore | 1.70262 | 0.00050 |
| k141_21925_15 | vegetarian > vegan | 1.35109 | 0.01277 |
| k141_21925_16 | vegetarian > omnivore | 2.11591 | 0.00050 |
| k141_21925_16 | vegetarian > vegan | 1.05836 | 0.01277 |
| k141_21925_17 | vegetarian > omnivore | 1.88988 | 0.00050 |
| k141_21925_17 | vegetarian > vegan | 1.38862 | 0.01277 |