Cluster: CGMR024035_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR024035
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_65430 | k141_65430_5 | 2944 | 4320 | - | GH13_20 |
| TC | k141_65430 | k141_65430_6 | 4474 | 5670 | - | 2.A.1.2.18 |
| NULL(UNKNOWN) | k141_65430 | k141_65430_7 | 5846 | 6598 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_65430 | k141_65430_8 | 6764 | 8137 | - | GH4 |
| TF | k141_65430 | k141_65430_9 | 8312 | 9064 | + | HTH_6 |
| TC | k141_65430 | k141_65430_10 | 9127 | 10791 | - | 4.A.1.1.3 |
| TC | k141_65430 | k141_65430_11 | 11106 | 13466 | - | 9.A.8.1.6 |
Gene ID: k141_65430_5
Type: CAZyme
Location: 2944 - 4320 (-)
Type: CAZyme
Location: 2944 - 4320 (-)
Gene ID: k141_65430_6
Type: TC
Location: 4474 - 5670 (-)
Type: TC
Location: 4474 - 5670 (-)
Gene ID: k141_65430_7
Type:
Location: 5846 - 6598 (-)
Type:
Location: 5846 - 6598 (-)
Gene ID: k141_65430_8
Type: CAZyme
Location: 6764 - 8137 (-)
Type: CAZyme
Location: 6764 - 8137 (-)
Gene ID: k141_65430_9
Type: TF
Location: 8312 - 9064 (+)
Type: TF
Location: 8312 - 9064 (+)
Gene ID: k141_65430_10
Type: TC
Location: 9127 - 10791 (-)
Type: TC
Location: 9127 - 10791 (-)
Gene ID: k141_65430_11
Type: TC
Location: 11106 - 13466 (-)
Type: TC
Location: 11106 - 13466 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019041915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_65430_7 | vegan > omnivore | 1.33528 | 0.00863 |
| k141_65430_8 | vegan > omnivore | 1.10782 | 0.00863 |