Cluster: CGMR024035_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: CGMR024035
- CGC Family ID: CGCFAM_00014
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_278572 | k141_278572_27 | 30181 | 30519 | - | 4.A.3.1.2 |
| TF | k141_278572 | k141_278572_28 | 30734 | 31738 | - | LacI |
| TC | k141_278572 | k141_278572_29 | 32096 | 33871 | + | 4.A.3.1.1 |
| CAZyme | k141_278572 | k141_278572_30 | 33938 | 35377 | + | GH1 |
| TF | k141_278572 | k141_278572_31 | 35722 | 36732 | - | LacI |
| TC | k141_278572 | k141_278572_32 | 37008 | 37325 | + | 4.A.3.1.1 |
Gene ID: k141_278572_27
Type: TC
Location: 30181 - 30519 (-)
Type: TC
Location: 30181 - 30519 (-)
Gene ID: k141_278572_28
Type: TF
Location: 30734 - 31738 (-)
Type: TF
Location: 30734 - 31738 (-)
Gene ID: k141_278572_29
Type: TC
Location: 32096 - 33871 (+)
Type: TC
Location: 32096 - 33871 (+)
Gene ID: k141_278572_30
Type: CAZyme
Location: 33938 - 35377 (+)
Type: CAZyme
Location: 33938 - 35377 (+)
Gene ID: k141_278572_31
Type: TF
Location: 35722 - 36732 (-)
Type: TF
Location: 35722 - 36732 (-)
Gene ID: k141_278572_32
Type: TC
Location: 37008 - 37325 (+)
Type: TC
Location: 37008 - 37325 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019041915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.