Cluster: CGMR023156_CGC19
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR023156
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_121650 | k141_121650_6 | 6376 | 7956 | + | 3.A.1.5.27 |
| TC | k141_121650 | k141_121650_7 | 8038 | 8970 | + | 3.A.1.5.11 |
| TC | k141_121650 | k141_121650_8 | 8972 | 9838 | + | 3.A.1.5.2 |
| TC | k141_121650 | k141_121650_9 | 9852 | 10853 | + | 3.A.1.5.12 |
| TC | k141_121650 | k141_121650_10 | 10854 | 11837 | + | 3.A.1.5.20 |
| peptidase | k141_121650 | k141_121650_11 | 11861 | 12901 | + | M42.UPW |
| pfam | k141_121650 | k141_121650_12 | 13177 | 14022 | + | PRD | PRD | CAT_RBD |
| TC | k141_121650 | k141_121650_13 | 14362 | 16257 | + | 4.A.1.2.6 |
| CAZyme | k141_121650 | k141_121650_14 | 16286 | 17719 | + | GH1 |
| TF | k141_121650 | k141_121650_15 | 18048 | 18806 | + | HTH_6 |
| TF | k141_121650 | k141_121650_16 | 18820 | 19593 | + | HTH_6 |
| CAZyme | k141_121650 | k141_121650_17 | 19782 | 21908 | + | CE1 |
| CAZyme | k141_121650 | k141_121650_18 | 21958 | 23850 | + | CE1 |
Gene ID: k141_121650_6
Type: TC
Location: 6376 - 7956 (+)
Type: TC
Location: 6376 - 7956 (+)
Gene ID: k141_121650_7
Type: TC
Location: 8038 - 8970 (+)
Type: TC
Location: 8038 - 8970 (+)
Gene ID: k141_121650_8
Type: TC
Location: 8972 - 9838 (+)
Type: TC
Location: 8972 - 9838 (+)
Gene ID: k141_121650_9
Type: TC
Location: 9852 - 10853 (+)
Type: TC
Location: 9852 - 10853 (+)
Gene ID: k141_121650_10
Type: TC
Location: 10854 - 11837 (+)
Type: TC
Location: 10854 - 11837 (+)
Gene ID: k141_121650_11
Type: peptidase
Location: 11861 - 12901 (+)
Type: peptidase
Location: 11861 - 12901 (+)
Gene ID: k141_121650_12
Type: pfam
Location: 13177 - 14022 (+)
Type: pfam
Location: 13177 - 14022 (+)
Gene ID: k141_121650_13
Type: TC
Location: 14362 - 16257 (+)
Type: TC
Location: 14362 - 16257 (+)
Gene ID: k141_121650_14
Type: CAZyme
Location: 16286 - 17719 (+)
Type: CAZyme
Location: 16286 - 17719 (+)
Gene ID: k141_121650_15
Type: TF
Location: 18048 - 18806 (+)
Type: TF
Location: 18048 - 18806 (+)
Gene ID: k141_121650_16
Type: TF
Location: 18820 - 19593 (+)
Type: TF
Location: 18820 - 19593 (+)
Gene ID: k141_121650_17
Type: CAZyme
Location: 19782 - 21908 (+)
Type: CAZyme
Location: 19782 - 21908 (+)
Gene ID: k141_121650_18
Type: CAZyme
Location: 21958 - 23850 (+)
Type: CAZyme
Location: 21958 - 23850 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia sp000508865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_121650_6 | vegan > omnivore | 4.20992 | 0.00186 |
| k141_121650_6 | vegetarian > omnivore | 3.43661 | 0.02751 |
| k141_121650_7 | vegan > omnivore | 1.71047 | 0.00186 |
| k141_121650_7 | vegetarian > omnivore | 1.36321 | 0.02751 |
| k141_121650_8 | vegan > omnivore | 1.46894 | 0.00186 |
| k141_121650_9 | vegan > omnivore | 1.33930 | 0.00186 |
| k141_121650_10 | vegan > omnivore | 4.41344 | 0.00186 |
| k141_121650_10 | vegetarian > omnivore | 3.60675 | 0.02751 |
| k141_121650_11 | vegan > omnivore | 4.38685 | 0.00186 |
| k141_121650_11 | vegetarian > omnivore | 4.20511 | 0.02751 |